View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15270_high_5 (Length: 365)
Name: NF15270_high_5
Description: NF15270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15270_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 41959563 - 41959913
Alignment:
| Q |
1 |
ttccctcaacaagcattctttccacatcaaaaacttggggcaaagcattggtttccaaactttaaaaatgcaatgaacattatcnnnnnnnnnnnnnnnn |
100 |
Q |
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| T |
41959563 |
ttccctcaacaagcattctttccacatcaaaaacttggggcaaagcattggtttccaaactttaaaaatgcaatgaacattatcaaaagaaaaagaaaaa |
41959662 |
T |
|
| Q |
101 |
ggagggatatgaataaaatggaattccaattgagaaagcaccaatgttgagagtgaccaatcattcattttcttctttcatcttttgagagtcacaacac |
200 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41959663 |
ggagggagatgaataaaatggaattccaattgagaaagcaccaatgttgagagtgaccaatcattcattttcttctttcatcttttgagagtcacaacac |
41959762 |
T |
|
| Q |
201 |
tcaaaacatttgattaacacatacaagggtttcccgttcaaccgttcacgaccctgtcacattattcat----ataaatcattagcacatggttacataa |
296 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
41959763 |
tcaaaacattcgattaacacatacaagggtttcccgttcaaccgttcacgaccctgtcacattattcatataaataaatcattagcacatggttacataa |
41959862 |
T |
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| Q |
297 |
cttaatggttcatagcaacnnnnnnnnttcaattatgttagtgaacaaata |
347 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
41959863 |
cttaatggttcatagcaacaaaaaaaattcaattatgttagtgaacaaata |
41959913 |
T |
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