View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15270_low_1 (Length: 657)
Name: NF15270_low_1
Description: NF15270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15270_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 243 - 641
Target Start/End: Original strand, 33554983 - 33555381
Alignment:
| Q |
243 |
gtaccttgtaaaagtctacagcaatgtagttaggccatcggttaccagcatctttatagcaagtatgcatctttcgaatcaatggggatgagttatccct |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
33554983 |
gtaccttgtaaaagtctacagcaatgtagttaggccatcggttaccagcatctttatagcaagtatgcatctttcgaatcaatggggatgagttatcctt |
33555082 |
T |
|
| Q |
343 |
acatgcttcattggaatttaggacatttctgtaatagttcattaggactagtgattttgttgttgtgttcattggatatgattctgctctatgtaaacaa |
442 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33555083 |
acatgcttcattggaatttaggacatttctgtaatagttcattaggactagtgattttgttgttgtgttcattggatatgattctgctctatgtaaacaa |
33555182 |
T |
|
| Q |
443 |
tgacctcttcccattccatcatttccatctgcaatttcacaaagtcatcgaaattgtcatttacatttacggtatataatctgatcttagcagaaaataa |
542 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33555183 |
tgatctcttcccattccatcatttccatctgcaatttcacaaagtcattgaaattgtcatttacatttacggtatataatctgatcttagcagaaaataa |
33555282 |
T |
|
| Q |
543 |
gaggaactcacatttattttccacaacatagttccattcataggcaatgcgttcagaagcctcttttgttgcatttgaagtgaacacaattaacctatg |
641 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33555283 |
gaggtactcacatttattttccacaacatagttccattcataggcaatgcgttcagaagcctcttttgttgcatttgaagtgaacacaattaacctatg |
33555381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 33554750 - 33554915
Alignment:
| Q |
17 |
aagaactacatcccatgtaaccnnnnnnncgacatgaaagtatagtttcatacattgcatatataaatttcgactgaactcacacaaacaaatttcgatt |
116 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
33554750 |
aagatctacatcccatgtaaccaaaaaaacgacatgaaagtatagtttcatacattgcatatataaat---gactgaactcacacaaacaaatttcgatt |
33554846 |
T |
|
| Q |
117 |
tgcaacatctaatgcttctggagctcccccaccatcacctctctgaatgcacaatcaactgatccattc |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33554847 |
tgcaacatctaatgcttctggagctcccccaccatcacctctctgaatgcacaatcaactgatccattc |
33554915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University