View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15270_low_3 (Length: 472)
Name: NF15270_low_3
Description: NF15270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15270_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Complemental strand, 21271263 - 21270810
Alignment:
| Q |
1 |
aggcatttatttaaaaattgaaagatgcagaaattttcaacgtttataatttttcctcctttgattgatacttgtgtgattatcatttgccggaattttt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
21271263 |
aggcatttatttaaaaatggaaagatgcagaaattttcaacgttg-taatttttcctcctttgattgatacttgtgtgattatcatttgccgcacttttg |
21271165 |
T |
|
| Q |
101 |
taagttgcatcatgcgcaattctgttctttaggattttgaaccttctttatcagtgattgtccgaaagtacatgcccggaaaccttgatctataggagtg |
200 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21271164 |
taagttgcatcatgtgcaattctgttctttaggattttgaaccttgtttctcagtgattgtccgaaagtacatgcccggaaaccttgatctaaaggagtg |
21271065 |
T |
|
| Q |
201 |
tctttattttaacagatcnnnnnnnaagtgaattggattagcaatttgcaaaacagatttagtaattttaaaaactgagctttagcaaccgcattattta |
300 |
Q |
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|||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21271064 |
tctttattttgacagatcttttttgaagtgaattggattagcaatttgcaaaacagatttagtaattttaaaaactgagctttagcaaccgcattattta |
21270965 |
T |
|
| Q |
301 |
gccttcgtaagctatgtgctgagttgattatttatacatatacgaagatatgtgctgatgtccatggtggtctcagcagcattacgaaagaaattatgaa |
400 |
Q |
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| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
21270964 |
gtcttcgtaagctatgtgctgagttgattatttttacatatacgaagatatgtgctgatgtccatggtggtctcagcagcattacgaacgaaattatgaa |
21270865 |
T |
|
| Q |
401 |
acaaaagttatacttaaactccagtaacaacagaatgccacaacatggtagttgt |
455 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21270864 |
acaaaagttatacttaaactccagtaacaacagaatgccacaacatggtagttgt |
21270810 |
T |
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