View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15270_low_4 (Length: 421)
Name: NF15270_low_4
Description: NF15270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15270_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 30400698 - 30401100
Alignment:
| Q |
1 |
ttctcgtctctatacaattcatatacttttaattattgagaataaatcttggatttaggtaagaagaccgttagttcagccaacgcaaaaaagttacctt |
100 |
Q |
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| T |
30400698 |
ttcttgtctctatacaattcatatacttttaattattgagaataaatcttggatttaggtaagaagaccgttagttcagccaacgcaaaaaagttacctt |
30400797 |
T |
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| Q |
101 |
atttcacaagaatgtacttaggnnnnnnntgtagttcatttatatgattgcaataatgttactaaatctgtaatttcttttcttctacagtctccgactc |
200 |
Q |
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| T |
30400798 |
atttcacgagaatgtacttaggaaaaaaatgtagttcatttatatgattgcaataatgttactaaatctgtaatttcttttcttctatagtctccgactc |
30400897 |
T |
|
| Q |
201 |
attttcaaaaaacaaaattatgagcgtaaaagagaattgtatagttaattcatgttttattttgatatggacaggtttgaattcaaaggtagatgggaga |
300 |
Q |
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| T |
30400898 |
attttcaaaaaacaaaattatgagcgtaaaagagaattgtatagttaattcatgttttattttgatatggacaggtttgaattcaaaggtagatgggaga |
30400997 |
T |
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| Q |
301 |
gaagatgatactatgattggtttaatcagcaatgccacctgatcttcatgggctttgaaatgcttcacattaaaggaattaaaaactgcaacagggaact |
400 |
Q |
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| T |
30400998 |
gaagatgatactatgattggtttaatcagcaatgccacc---tcttcatgggctttgaaatgcttcacattaaaggaattaaaaactgcaacagggaact |
30401094 |
T |
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| Q |
401 |
tggttc |
406 |
Q |
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|||||| |
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| T |
30401095 |
tggttc |
30401100 |
T |
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