View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15270_low_9 (Length: 257)
Name: NF15270_low_9
Description: NF15270
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15270_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 39327473 - 39327691
Alignment:
| Q |
17 |
aatataggctaattaatttgtttaaggttataattgaaataacgaaaaaatccagccccaaatcccatatcctctttatgtattgttatagatgttaggt |
116 |
Q |
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| T |
39327473 |
aatataggctaattaatttgtttaagggaataattgaaataacaaaaaaatccagccccaaatcccatatcctctttatatattgttatagatgttaggt |
39327572 |
T |
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| Q |
117 |
tataatttttatttgttgagtgtttctctttctataatgtgaattcttcatttggttttgataatgtacatacaaggactaccatgaagaaagaaaatta |
216 |
Q |
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| T |
39327573 |
tataatttttatttgttgagtgtttctctttctataatgtgaattcttcatttggttttgataatgtacatacagggactaccatgaagaaagaaaatta |
39327672 |
T |
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| Q |
217 |
tctttatcttgaggatgct |
235 |
Q |
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| T |
39327673 |
tctttatcttgaggatgct |
39327691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 123 - 235
Target Start/End: Original strand, 39418747 - 39418859
Alignment:
| Q |
123 |
ttttatttgttgagtgtttctctttctataatgtgaattcttcatttggttttgataatg-tacatacaaggactaccatgaagaaagaaaattatcttt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| | | || | ||||||||||||||| ||||||||||| |||||||| |
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| T |
39418747 |
ttttatttgttgagtgtttctctttctataatgtgaattattcatttggtttggttgctgatgcatacaaggactaccgcgaagaaagaaatttatcttt |
39418846 |
T |
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| Q |
222 |
atcttgaggatgct |
235 |
Q |
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| T |
39418847 |
gtc-tgaggatgct |
39418859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 38004380 - 38004317
Alignment:
| Q |
31 |
aatttgtttaaggttataattgaaataacgaaaaaatccagccccaaatcccatatcctctttat |
95 |
Q |
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| T |
38004380 |
aatttgttcaagggtataattgaaataac-aaaaaattcagcccaaaatctcatattctctttat |
38004317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 27175170 - 27175119
Alignment:
| Q |
34 |
ttgtttaaggttataattgaaataacgaaaaaatccagccccaaatcccatat |
86 |
Q |
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|||||||| | |||||||| |||||| |||||||||||||| ||||||||||| |
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| T |
27175170 |
ttgtttaatggtataattggaataac-aaaaaatccagcccaaaatcccatat |
27175119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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