View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15271_high_2 (Length: 387)
Name: NF15271_high_2
Description: NF15271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15271_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 377
Target Start/End: Original strand, 32606117 - 32606495
Alignment:
| Q |
1 |
cccgggtcaacccggtgttagtttggaaaatgcagtttcttataatgggaatcttattaagcatgttaattctgggaaaggaactcctttgatgcctaat |
100 |
Q |
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| T |
32606117 |
cccgggtcaacccggtgttagtttggaaaatgcagtttcttataatgggaatcttattaagcatgttaattctgggaaaggaactcctttgatgcctaat |
32606216 |
T |
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| Q |
101 |
aggacttttgagacttatattttctcattgtttaatgagaatcttaaacctactatttcggagcagaattatgggttgtttaaaccggatcttaccccgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32606217 |
aggacttttgagacttatattttctcattgtttaatgagaatcttaaacctactatttcggagcagaattatgggttgtttaaaccggatcttaccccgg |
32606316 |
T |
|
| Q |
201 |
tttatgacgttggagttttaacccaaaaacatcagcaggtacctatacattttctttttgctttcatttatccgtttattttagtggnnnnnnnntagag |
300 |
Q |
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| T |
32606317 |
tttatgacgttggagttttaacccaaaaacatcagcaggtacaaatac-ttttttttttcctttcatttatccgtttattttagtgg-aaaaaaatagag |
32606414 |
T |
|
| Q |
301 |
aat----cttactgttttagacctttacgtgacaaagtagaacacgacatgtttttatgcaagtacatttatgcccctatg |
377 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32606415 |
aatcttacttactgttttagacctttacgtgacaaagtagaacacgacatgtttttatgcaagtacatttatgcccctatg |
32606495 |
T |
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