View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15271_high_3 (Length: 359)
Name: NF15271_high_3
Description: NF15271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15271_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 48 - 260
Target Start/End: Complemental strand, 33698334 - 33698122
Alignment:
| Q |
48 |
ttataattaagttagtacatccaaaaaacataataaagcttaccaaatttatatatataattaaggaaaagataaagaaccttttttgcttagaagcaaa |
147 |
Q |
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| T |
33698334 |
ttataattaagttagtacatccaaaaaacataataaagcttaccaaatttatatatataattaaggaaaagataaagaaccttttttgcttagaagcaaa |
33698235 |
T |
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| Q |
148 |
gaagatgttagggtgttgagagtagagttgaaaagtttctcctatataaggccaacccaatgaacctgggggaagtttaggtttggctatggtttcgtgt |
247 |
Q |
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| T |
33698234 |
gaagatgttagggtgttgagagtagagttgaaaagtttctcctatataaggccaacccaatgaacctgggggaagtttaggtttggctatggtttcgtgt |
33698135 |
T |
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| Q |
248 |
ttattgtatttct |
260 |
Q |
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| T |
33698134 |
ttattgtatttct |
33698122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 124 - 221
Target Start/End: Complemental strand, 33657533 - 33657436
Alignment:
| Q |
124 |
gaaccttttttgcttagaagcaaagaagatgttagggtgttgagagtagagttgaaaagtttctcctatataaggccaacccaatgaacctgggggaa |
221 |
Q |
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| T |
33657533 |
gaaccttttttgtttagaagcaaagaaggtgttaggatgttgagagtaaagttgaagagtttctcctatatatggccaacccattgaacctgggggaa |
33657436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 143 - 213
Target Start/End: Complemental strand, 10422748 - 10422678
Alignment:
| Q |
143 |
gcaaagaagatgttagggtgttgagagtagagttgaaaagtttctcctatataaggccaacccaatgaacc |
213 |
Q |
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| T |
10422748 |
gcaaagaagacattagggtcttgagaataaagttgaaaagtttctcctatgtaaggccaacccattgaacc |
10422678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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