View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15271_low_1 (Length: 614)
Name: NF15271_low_1
Description: NF15271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15271_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 3 - 597
Target Start/End: Complemental strand, 14267074 - 14266468
Alignment:
| Q |
3 |
attcttccaaaaagagttcttccagatttggacaaccagatagaaaattagtgagactatactcaatatgatcatcaaagatacaatttaacatagttga |
102 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14267074 |
attcttctaaaaagagttcttctagatttggacaaccagatagaaaattagtgagactatactcaatatgatcatcaaagatacaattaaacatagttga |
14266975 |
T |
|
| Q |
103 |
ttggagatgaagaatctttaatgatggtaaatatacatcaaaagaagaattgagttttggttgaattctgccccgcaattttaagaccacaagtgactca |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14266974 |
ttggagatgaagaatctttaatgatggtaaatatacatcaaaagaagaatcgagttttggttgaattctgccccgcaattttaagaccacaagtgactca |
14266875 |
T |
|
| Q |
203 |
tatgtgaaaagcctacatggcaataaggttttttcatggagttccaagcccaagtcaagttccttaaccttgaggtctaaggcttttgaaacccacatgt |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14266874 |
tatgtgaaaagcctacatggcaataaggttttttcatggagttccaagcccaagtcaagttccttaaccttgaggtctaaggcttttgaaacccacatgt |
14266775 |
T |
|
| Q |
303 |
gtatatcttgtggttgccagctatcaatgtcatgatctctactatagagacttagttttcttagattttcggttcgccgtaggagagcagcatatacata |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
14266774 |
gtatatcttgtggttgccagctatcaatgtcatgatccctactatagagacttagttttcttagattttcggttcgtcttaggagagcagcatatacata |
14266675 |
T |
|
| Q |
403 |
tttgatttctttggacgacacaaggtctg------------attcaaagtgaaggtcggggattttggtgtagatagacctccatcttgtagatagaaca |
490 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14266674 |
tttgatttctttggacgacacaaggtctgattcttctggaaattcaaagtgaaggtcagggattttggtgtagatagacctccatcttgtagatagaaca |
14266575 |
T |
|
| Q |
491 |
catgttctataagactctttagttgataggaaagacaaaataagataaatcaaatcgtccgagagattgcttaatcggtcatattctacgtaagagcacg |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14266574 |
catgttctataagactctttagttgataggaaagacaaaatacaataaatcaaatcgtccgagagattgcttaatcggtcatattctacataagagcacg |
14266475 |
T |
|
| Q |
591 |
ccattgt |
597 |
Q |
| |
|
||||||| |
|
|
| T |
14266474 |
ccattgt |
14266468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 102 - 570
Target Start/End: Complemental strand, 40978538 - 40978067
Alignment:
| Q |
102 |
attggagatgaagaatctttaatgatggtaaatatacatcaaaagaagaattgagttttggttgaattctgccccgcaattttaagaccacaagtgactc |
201 |
Q |
| |
|
||||||| | ||||||||||| ||| || ||| | |||||| ||||| |||| ||| ||||| || ||||||||||||||||||||||||| || |||| |
|
|
| T |
40978538 |
attggagtttaagaatctttagtgacggaaaacacacatcagaagaaaaattaagtcttggtcgagttctgccccgcaattttaagaccacgagcgactt |
40978439 |
T |
|
| Q |
202 |
atatgtgaaaagcctacatggcaataaggttt-tttc---atggagttccaagcccaagtcaagttccttaaccttgaggtctaaggcttttgaaaccca |
297 |
Q |
| |
|
| | || |||||||| |||||||||||| |||| | ||| | ||| || || |||||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
40978438 |
agaaatggaaagcctaaggggcaataaggttggtttctcgacggacctacaatcc-aactcaagttcctcaaccttgaggtctaatgcttttgaaaccca |
40978340 |
T |
|
| Q |
298 |
catgtgtatatcttgtggttgccagctatcaatgtcatgatctctactatagagacttagttttcttagattttcggttcgccgtaggagagcagcatat |
397 |
Q |
| |
|
|| ||| ||||| | |||| || | || ||||| |||||||| ||||||||||||| |||||||| || | ||||||||| |||||| |
|
|
| T |
40978339 |
caagtgcatatcatatggtgtgcaaccat---tgtca---------ctatagagccttagttttcttaagttttcggtgcgtcttaggagagctgcatat |
40978252 |
T |
|
| Q |
398 |
acatatttgatttctttggacgacacaaggtctg------------attcaaagtgaaggtcggggattttggtgtagatagacctccatcttgtagata |
485 |
Q |
| |
|
||| ||| |||| |||||||||||| | ||| | ||||||||| ||||| |||||| || ||| | || ||| |||||||||||||| |
|
|
| T |
40978251 |
acagattggattgctttggacgacatagggttcgtagtctttggtaattcaaagtcaaggttggggatctttgtgcatatcgactcccatcttgtagata |
40978152 |
T |
|
| Q |
486 |
gaacacatgttctataagactctttagttgataggaaagacaaaataagataaatcaaatcgtccgagagattgcttaatcggtc |
570 |
Q |
| |
|
|||||| ||||| ||||||||||| |||| |||||||||||||||| || |||||| ||||| |||||||||||||||||||| |
|
|
| T |
40978151 |
gaacacttgttcggtaagactcttttgttgttaggaaagacaaaatatgaataatcaattcgtctgagagattgcttaatcggtc |
40978067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 436 - 565
Target Start/End: Complemental strand, 40967679 - 40967550
Alignment:
| Q |
436 |
aaagtgaaggtcggggattttggtgtagatagacctccatcttgtagatagaacacatgttctataagactctttagttgataggaaagacaaaataaga |
535 |
Q |
| |
|
||||| |||||||||||| |||||| |||| ||| ||||||||| ||||| ||||| ||| | | ||||||||| ||||||||||||||||||||| || |
|
|
| T |
40967679 |
aaagttaaggtcggggatcttggtgcagatcgactcccatcttgtggatagtacacaagttttgtgagactcttttgttgataggaaagacaaaatacga |
40967580 |
T |
|
| Q |
536 |
taaatcaaatcgtccgagagattgcttaat |
565 |
Q |
| |
|
||||||| ||||| ||||||| ||||||| |
|
|
| T |
40967579 |
aaaatcaattcgtctgagagatcgcttaat |
40967550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 144 - 309
Target Start/End: Complemental strand, 40967974 - 40967806
Alignment:
| Q |
144 |
aagaagaattgagttttggttgaattctgccccgcaattttaagaccacaagtgactcatatgtgaaaagcctacatggcaataaggttt-tttcatgga |
242 |
Q |
| |
|
||||| |||||||| |||||||| ||| ||| ||||||||||||||||||||||||| | | || |||||||| ||||||| |||| ||| || | |
|
|
| T |
40967974 |
aagaataattgagtcttggttgagttccgcctcgcaattttaagaccacaagtgacttagaaatggaaagcctaagcggcaatatggttggttttttgaa |
40967875 |
T |
|
| Q |
243 |
gttcca--agcccaagtcaagttccttaaccttgaggtctaaggcttttgaaacccacatgtgtatatc |
309 |
Q |
| |
|
| ||| | |||| |||||||||| ||||||||||||||| |||||||| ||||||| ||||| ||| |
|
|
| T |
40967874 |
ggaccagcattccaattcaagttcctgaaccttgaggtctaatgcttttgatacccacaagtgtacatc |
40967806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 457; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 3 - 597
Target Start/End: Complemental strand, 45484029 - 45483421
Alignment:
| Q |
3 |
attcttccaaaaagagttcttccagatttggacaaccagatagaaaattagtgagactatactcaatatgatcatcaaagatacaatttaacatagttga |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45484029 |
attcttccaaaaagagttcttccagatttggacaactagatagaaaattagtgagactatactcaatatgatcatcaaagatacaatttaacatagttga |
45483930 |
T |
|
| Q |
103 |
ttggagatgaagaatctttaatgatggt-----aaatatacatcaaaagaagaattgagttttggttgaattctgccccgcaattttaagaccacaagtg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45483929 |
ttggagatgaagaatctttaatgatggtaaattaaatatacatcaaaagaagaatcgagttttggttgaattctgccccacaattttaagaccacaagtg |
45483830 |
T |
|
| Q |
198 |
actcatatgtgaaaagcctacatggcaataagg-ttttttcatggagttccaagcccaagtcaagttccttaaccttgaggtctaaggcttttgaaaccc |
296 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45483829 |
actcatatgtgaaaagcctacgtggcaataaggtttttttcatggagttccaagcccaagtcaagttccttaaccttgaggtctaaggcttttgaaaccc |
45483730 |
T |
|
| Q |
297 |
acatgtgtatatcttgtggttgccagctatcaatgtcatgatctctactatagagacttagttttcttagattttcggttcgccgtaggagagcagcata |
396 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||| | | ||||||||||||||| |
|
|
| T |
45483729 |
acatgtgcatatcgtgtggttgccagctatcaatgtcatgatccctactat--agacttagttttcttaga-tttcggttagtcttaggagagcagcata |
45483633 |
T |
|
| Q |
397 |
tacatatttgatttctttggacgacacaaggtctg------------attcaaagtgaaggtcggggattttggtgtagatagacctccatcttgtagat |
484 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||||| |
|
|
| T |
45483632 |
tacatatttgatttctttggacgacacaaggtctgattcttctggaaattcaaagtgaaggtcggggattttggtgtagatcaacctccatc-tatagat |
45483534 |
T |
|
| Q |
485 |
agaacacatgttctataagactctttagttgataggaaagacaaaataagataaatcaaatcgtccgagagattgcttaatcggtcatattctacgtaag |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45483533 |
agaacacatgttctataagactctttagttgataggaaagacaaaatacgataaatcaaatcgtccgagagattgcttaatcggtcatattctacgtaag |
45483434 |
T |
|
| Q |
585 |
agcacgccattgt |
597 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
45483433 |
agcacaccattgt |
45483421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 1e-92; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 17 - 572
Target Start/End: Original strand, 20450771 - 20451326
Alignment:
| Q |
17 |
agttcttccagatttggacaaccagatagaaaattagtgagactatactcaatatgatcatcaaagatacaatttaacatagttgattggagatgaagaa |
116 |
Q |
| |
|
||||| |||| || |||||||||||||||||||||| ||||| |||||| || |||||||||||||| ||| || |||| |||||||||||| |
|
|
| T |
20450771 |
agttcctccaaatgtggacaaccagatagaaaattattgagagcatactctgtacgatcatcaaagatagaatacgccacagtttcacggagatgaagaa |
20450870 |
T |
|
| Q |
117 |
tctttaatgatggtaaatatacatcaaaagaagaattgagttttggttgaattctgccccgcaattttaagaccacaagtgactcatatgtgaaaagcct |
216 |
Q |
| |
|
|||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||||| ||||||| |
|
|
| T |
20450871 |
tctttagtgacggtaaatatacatgaaaagaagaattgagttttggttgaattctgccctgcaattttaagaccacgagtgactcacatgtggaaagcct |
20450970 |
T |
|
| Q |
217 |
acatggcaataaggttttttcatggagttccaagcccaagtcaagttccttaaccttgaggtctaaggcttttgaaacccacatgtgtatatcttgtggt |
316 |
Q |
| |
|
| ||||||||| ||||||||||||| || |||| |||||||||| |||||||| ||||| || ||||||||||||||| ||| ||| ||||| |
|
|
| T |
20450971 |
aagcggcaataagattttttcatggagaaacagatccaactcaagttcctggaccttgagatctaatgcctttgaaacccacatgcgtacatcatgtggc |
20451070 |
T |
|
| Q |
317 |
tgccagctatcaatgtcatgatctctactatagagacttagttttcttagattttcggttcgccgtaggagagcagcatatacatatttgatttctttgg |
416 |
Q |
| |
|
|| |||| || |||| ||||| |||||||||||||||| ||||||||| || | |||||||||| ||| |||| ||||||||||||||| |
|
|
| T |
20451071 |
tgacagccat-----------tctc-actattaagacttagttttcttatattttcggtgcgtcttaggagagcaacatttacaaatttgatttctttgg |
20451158 |
T |
|
| Q |
417 |
acgacacaaggtctg------------attcaaagtgaaggtcggggattttggtgtagatagacctccatcttgtagatagaacacatgttctataaga |
504 |
Q |
| |
|
| ||||| | |||| ||| ||||||||||| || || |||||| |||| ||| ||||||||| ||||||||||||||||||||| | |
|
|
| T |
20451159 |
ataacacaggatctgaattctctggtaattgaaagtgaaggttaggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctataaca |
20451258 |
T |
|
| Q |
505 |
ctctttagttgataggaaagacaaaataagataaatcaaatcgtccgagagattgcttaatcggtcat |
572 |
Q |
| |
|
|||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
20451259 |
ctctttggttgataggaaagacaaaatatgacaaatcaaatcgtctgagagattgcttaatcgatcat |
20451326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 105 - 594
Target Start/End: Original strand, 20443986 - 20444475
Alignment:
| Q |
105 |
ggagatgaagaatctttaatgatggtaaatatacatcaaaagaagaattgagttttggttgaattctgccccgcaattttaagaccacaagtgactcata |
204 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| ||||| |||||||||| ||||||||||||||||| |||||||||||||||| ||||||||| | |
|
|
| T |
20443986 |
ggagatgaagaatctttagtgacggtaaatatacatgaaaagcagaattgagtgttggttgaattctgccctgcaattttaagaccacgagtgactcaca |
20444085 |
T |
|
| Q |
205 |
tgtgaaaagcctacatggcaataaggttttttcatggagttccaagcccaagtcaagttccttaaccttgaggtctaaggcttttgaaacccacatgtgt |
304 |
Q |
| |
|
||| |||| ||| ||||||||||||||||||||||| ||| |||||||||||||||| |||||||| ||||| || |||||||||||||||||| |
|
|
| T |
20444086 |
cgtggaaagtctaagcggcaataaggttttttcatggagaagcaaacccaagtcaagttcctggaccttgagatctaatgcctttgaaacccacatgtgt |
20444185 |
T |
|
| Q |
305 |
atatcttgtggttgccagctatcaatgtcatgatctctactatagagacttagttttcttagattttcggttcgccgtaggagagcagcatatacatatt |
404 |
Q |
| |
|
| ||| ||||| || |||| | |||| || || || ||||||||||||| ||||||||| || | |||||||||| ||| |||| ||| |
|
|
| T |
20444186 |
acatcatgtggctggcagcctt-----------tctc-accatcaagccttagttttcttatattttcggtgcgtcttaggagagcaacatttacaaatt |
20444273 |
T |
|
| Q |
405 |
tgatttctttggacgacacaaggtctg------------attcaaagtgaaggtcggggattttggtgtagatagacctccatcttgtagatagaacaca |
492 |
Q |
| |
|
|||||||||||||| || || |||||| ||| ||||||||||| ||| || |||||| |||| ||| ||||||||| ||||||| ||| |
|
|
| T |
20444274 |
tgatttctttggacaactcagggtctgaaatctctggtaattgaaagtgaaggttgggaatcttggtgcagatcgactcccatcttgtggatagaaaaca |
20444373 |
T |
|
| Q |
493 |
tgttctataagactctttagttgataggaaagacaaaataagataaatcaaatcgtccgagagattgcttaatcggtcatattctacgtaagagcacgcc |
592 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||| || ||||||||||||| ||||||||||||||||| |||| || | | | |||||||||| |
|
|
| T |
20444374 |
tgttctataacactctttggttgataggaaagacaaaatatgacaaatcaaatcgtctgagagattgcttaatcgatcatgtttttcatcagagcacgcc |
20444473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 17 - 305
Target Start/End: Original strand, 20462394 - 20462682
Alignment:
| Q |
17 |
agttcttccagatttggacaaccagatagaaaattagtgagactatactcaatatgatcatcaaagatacaatttaacatagttgattggagatgaagaa |
116 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||| ||||| |||||| ||||||||||||||| | ||| || || ||||||| |||||||||||| |
|
|
| T |
20462394 |
agttcctccagatgtggacaaccagatagaaaattattgagatcatactctctatgatcatcaaagaaagaatatatcacagttgatcggagatgaagaa |
20462493 |
T |
|
| Q |
117 |
tctttaatgatggtaaatatacatcaaaagaagaattgagttttggttgaattctgccccgcaattttaagaccacaagtgactcatatgtgaaaagcct |
216 |
Q |
| |
|
|||||| ||| ||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||| |
|
|
| T |
20462494 |
tctttagtgacggtaaatatacatgaagagaagaattgagtgttggttgaattctgccccgcaattttaagaccacaagtgactcacaagtggaaagcct |
20462593 |
T |
|
| Q |
217 |
acatggcaataaggttttttcatggagttccaagcccaagtcaagttccttaaccttgaggtctaaggcttttgaaacccacatgtgta |
305 |
Q |
| |
|
| ||||| ||||||||||||||||| ||| ||||||||||||||| |||||||| ||||| || ||||| ||||||||||||| |
|
|
| T |
20462594 |
aagcggcaacaaggttttttcatggagaaacaaatccaagtcaagttcctggaccttgagatctaaagcctttgagacccacatgtgta |
20462682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 17 - 314
Target Start/End: Original strand, 20431597 - 20431894
Alignment:
| Q |
17 |
agttcttccagatttggacaaccagatagaaaattagtgagactatactcaatatgatcatcaaagatacaatttaacatagttgattggagatgaagaa |
116 |
Q |
| |
|
||||| |||| || |||||||||||||||||||||| ||||| |||||| ||| ||||||||| ||| ||| | || |||| |||||||||||| |
|
|
| T |
20431597 |
agttcctccaaatgtggacaaccagatagaaaattattgagatcatactccataccatcatcaaacatagaatatgtcacagtttcacggagatgaagaa |
20431696 |
T |
|
| Q |
117 |
tctttaatgatggtaaatatacatcaaaagaagaattgagttttggttgaattctgccccgcaattttaagaccacaagtgactcatatgtgaaaagcct |
216 |
Q |
| |
|
|||||| ||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||| |
|
|
| T |
20431697 |
tctttagtgacggtaaatatacatgaaaagaagaattgagtgttggttgaattctgccccgcaattttaagaccacgagtgactcacacgtggaaagctg |
20431796 |
T |
|
| Q |
217 |
acatggcaataaggttttttcatggagttccaagcccaagtcaagttccttaaccttgaggtctaaggcttttgaaacccacatgtgtatatcttgtg |
314 |
Q |
| |
|
|||||||| |||||||||||| || ||||||||||||||| |||||||| ||||| || ||||||||||||||||||| ||| |||| |
|
|
| T |
20431797 |
gagcggcaataaaactttttcatggagaaacagatccaagtcaagttcctggaccttgagatctaatgcctttgaaacccacatgtgtacatcatgtg |
20431894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 315
Target Start/End: Original strand, 20440296 - 20440594
Alignment:
| Q |
17 |
agttcttccagatttggacaaccagatagaaaattagtgagactatactcaatatgatcatcaaagatacaatttaacatagttgattggagatgaagaa |
116 |
Q |
| |
|
||||| |||| || |||||||||||||| ||||||| ||||| |||||| || |||||||||||| | ||| | || | || ||| |||||||| |
|
|
| T |
20440296 |
agttcctccaaatgtggacaaccagataaaaaattattgagatcatactctctaagatcatcaaagagagaatacaccacactttcacggatatgaagaa |
20440395 |
T |
|
| Q |
117 |
tctttaatgatggtaaatatacatcaaaagaagaattgagttttggttgaattctgccccgcaattttaagaccacaagtgactcatatgtgaaaagcct |
216 |
Q |
| |
|
|||||| ||| ||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | ||| ||||||| |
|
|
| T |
20440396 |
tctttagtgacggtaaatatacatgaaatgaagaattgagtgttggttgaattctgccccgcaattttaagaccacgagtgactcacacgtggaaagcct |
20440495 |
T |
|
| Q |
217 |
acatggcaataaggttttttcatggagttccaagcccaagtcaagttccttaaccttgaggtctaaggcttttgaaacccacatgtgtatatcttgtgg |
315 |
Q |
| |
|
| |||||||| ||||||||||||| ||| ||| ||||||||||| |||||||| ||||| || ||||||||||||| ||||| ||| ||||| |
|
|
| T |
20440496 |
aagcggcaataatattttttcatggagaaacaaatccaggtcaagttcctggaccttgagatctaatgcctttgaaacccacaggtgtacatcatgtgg |
20440594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 105 - 305
Target Start/End: Original strand, 20279115 - 20279315
Alignment:
| Q |
105 |
ggagatgaagaatctttaatgatggtaaatatacatcaaaagaagaattgagttttggttgaattctgccccgcaattttaagaccacaagtgactcata |
204 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| | |
|
|
| T |
20279115 |
ggagatgaagaatctttagtgacggtaaatatacatgaaaagaagaattgagtgttggttgaattctgccccgcaattttaagaccacgagtgactcaca |
20279214 |
T |
|
| Q |
205 |
tgtgaaaagcctacatggcaataaggttttttcatggagttccaagcccaagtcaagttccttaaccttgaggtctaaggcttttgaaacccacatgtgt |
304 |
Q |
| |
|
|| |||||||| |||| |||| ||||||||||||| || ||||||||||||||| |||||||| || || || |||||||||||||||||| |
|
|
| T |
20279215 |
catggaaagcctaagcggcagtaagattttttcatggagaaacagatccaagtcaagttcctggaccttgagatcaaatgcctttgaaacccacatgtgt |
20279314 |
T |
|
| Q |
305 |
a |
305 |
Q |
| |
|
| |
|
|
| T |
20279315 |
a |
20279315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 32 - 302
Target Start/End: Original strand, 20476623 - 20476893
Alignment:
| Q |
32 |
ggacaaccagatagaaaattagtgagactatactcaatatgatcatcaaagatacaatttaacatagttgattggagatgaagaatctttaatgatggta |
131 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||| ||| ||| ||||||||| ||| | || |||| ||||||||||||||||||| ||| |||| |
|
|
| T |
20476623 |
ggacaaccagatagaaaattattgagatcatactctatactatcctcaaagatagaatacatcacagtttcatggagatgaagaatctttagtgacggta |
20476722 |
T |
|
| Q |
132 |
aatatacatcaaaagaagaattgagttttggttgaattctgccccgcaattttaagaccacaagtgactcatatgtgaaaagcctacatggcaataaggt |
231 |
Q |
| |
|
||| ||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| || ||||||||| | || |||||| ||||||||| | |
|
|
| T |
20476723 |
aatgtacatgaaaagaggaattgagtgttggttgaattctgccccgcaattttaagactacgagtgactcacacgtagaaagccggagcggcaataagat |
20476822 |
T |
|
| Q |
232 |
tttttcatggagttccaagcccaagtcaagttccttaaccttgaggtctaaggcttttgaaacccacatgt |
302 |
Q |
| |
|
||||||||| || ||| ||| ||||||||||| |||||||| ||||| || |||||||||||||||| |
|
|
| T |
20476823 |
tttttcatgcagaaacaaatccaggtcaagttcctggaccttgagatctaatgcctttgaaacccacatgt |
20476893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 436 - 594
Target Start/End: Original strand, 20477147 - 20477305
Alignment:
| Q |
436 |
aaagtgaaggtcggggattttggtgtagatagacctccatcttgtagatagaacacatgttctataagactctttagttgataggaaagacaaaataaga |
535 |
Q |
| |
|
||||||||||| ||| || |||||| |||| ||| ||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
20477147 |
aaagtgaaggttgggaatcttggtgcagatcgactcccatcttttggatagaacacatgttctataagactcttttgttgataggaaagacaaaatatga |
20477246 |
T |
|
| Q |
536 |
taaatcaaatcgtccgagagattgcttaatcggtcatattctacgtaagagcacgccat |
594 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||| || | | | |||||||||||| |
|
|
| T |
20477247 |
caaatcaaatcgtctgagagattgcttaatcgatcatgtttttcatcagagcacgccat |
20477305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 436 - 594
Target Start/End: Original strand, 20432127 - 20432285
Alignment:
| Q |
436 |
aaagtgaaggtcggggattttggtgtagatagacctccatcttgtagatagaacacatgttctataagactctttagttgataggaaagacaaaataaga |
535 |
Q |
| |
|
||||||||||| ||| || |||||| |||| ||| ||||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||| || |
|
|
| T |
20432127 |
aaagtgaaggttgggaatcttggtgcagatcgactcccatcttttggatagaacacatgttctataagactcttttgttgataggaaagaacaaatatga |
20432226 |
T |
|
| Q |
536 |
taaatcaaatcgtccgagagattgcttaatcggtcatattctacgtaagagcacgccat |
594 |
Q |
| |
|
||||||||||||| ||||||||||||||||| |||| || | | | |||||||||||| |
|
|
| T |
20432227 |
caaatcaaatcgtctgagagattgcttaatcgatcatgtttttcatcagagcacgccat |
20432285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 432 - 594
Target Start/End: Original strand, 20462899 - 20463061
Alignment:
| Q |
432 |
attcaaagtgaaggtcggggattttggtgtagatagacctccatcttgtagatagaacacatgttctataagactctttagttgataggaaagacaaaat |
531 |
Q |
| |
|
|||||||| ||||| ||| || |||||| |||| ||| ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
20462899 |
attcaaagcgaaggctgggaatcttggtgcagatcgactcccatcttgtggatagaacacatgttctgtaagactcttttgttgataggaaagacaaaat |
20462998 |
T |
|
| Q |
532 |
aagataaatcaaatcgtccgagagattgcttaatcggtcatattctacgtaagagcacgccat |
594 |
Q |
| |
|
| || ||||||||||||| | ||||||||||||||| || | |||| | | |||||||||||| |
|
|
| T |
20462999 |
atgacaaatcaaatcgtctgggagattgcttaatcgatcgtgttcttcatcagagcacgccat |
20463061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 440 - 572
Target Start/End: Original strand, 20279561 - 20279693
Alignment:
| Q |
440 |
tgaaggtcggggattttggtgtagatagacctccatcttgtagatagaacacatgttctataagactctttagttgataggaaagacaaaataagataaa |
539 |
Q |
| |
|
||||||| ||| || |||||| |||| ||| ||||||||| ||||||||||||||||||||| ||| ||| ||||||||||||||||||||| || ||| |
|
|
| T |
20279561 |
tgaaggttgggaatcttggtgcagattgactcccatcttgtggatagaacacatgttctataacactgttttgttgataggaaagacaaaatatgacaaa |
20279660 |
T |
|
| Q |
540 |
tcaaatcgtccgagagattgcttaatcggtcat |
572 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| |
|
|
| T |
20279661 |
tcaaatcgtctgagagattgcttaatcgatcat |
20279693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 436 - 566
Target Start/End: Original strand, 20440826 - 20440956
Alignment:
| Q |
436 |
aaagtgaaggtcggggattttggtgtagatagacctccatcttgtagatagaacacatgttctataagactctttagttgataggaaagacaaaataaga |
535 |
Q |
| |
|
||||||||||| ||| || ||| || | || ||| ||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
20440826 |
aaagtgaaggttgggaatcttgatgcaaatggactcccatcttgtggataaaacacatgttctataagactcttttgttgataggaaagacaaaatatga |
20440925 |
T |
|
| Q |
536 |
taaatcaaatcgtccgagagattgcttaatc |
566 |
Q |
| |
|
||||||||||||| |||||||||||||||| |
|
|
| T |
20440926 |
caaatcaaatcgtctgagagattgcttaatc |
20440956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 106 - 167
Target Start/End: Original strand, 37067851 - 37067912
Alignment:
| Q |
106 |
gagatgaagaatctttaatgatggtaaatatacatcaaaagaagaattgagttttggttgaa |
167 |
Q |
| |
|
||||||||||||||||| ||| ||||||| || |||||||||||||| ||| ||||||||| |
|
|
| T |
37067851 |
gagatgaagaatctttagtgacggtaaatgtatatcaaaagaagaatcaagtgttggttgaa |
37067912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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