View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15271_low_10 (Length: 318)
Name: NF15271_low_10
Description: NF15271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15271_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 34664708 - 34664505
Alignment:
| Q |
1 |
gctttttcagatgttctaactaattagtgctttactctaacatacatattttgctgacatcatttacgcatcagttggcaaatgcaatgctcaatgagaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34664708 |
gctttttcagatgttctaactaattagtgctttactctaacatacatattttgctgacatcatttacgcatcagttggcaaatacaatgctcaatgagaa |
34664609 |
T |
|
| Q |
101 |
gcagaaggctggattttgttcagatagtgacggcttctataagtctaacagggagtggttgggaagacatcattttattttagcatttgaaaggtatcat |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34664608 |
gcagaaggctggattttgttcagatggtgacggcttctataagtctaacagggagtggttgggaagacatcattttattttagcatttgaaaggtatcat |
34664509 |
T |
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| Q |
201 |
ttct |
204 |
Q |
| |
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|||| |
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|
| T |
34664508 |
ttct |
34664505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 26958478 - 26958275
Alignment:
| Q |
1 |
gctttttcagatgttctaactaattagtgctttactctaacatacatattttgctgacatcatttacgcatcagttggcaaatgcaatgctcaatgagaa |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26958478 |
gctttttcagatgttctaactagttagtgctttactctaacatacatattttgctgacatcatttacgcatcagttggcaaatacaatgctcaatgagaa |
26958379 |
T |
|
| Q |
101 |
gcagaaggctggattttgttcagatagtgacggcttctataagtctaacagggagtggttgggaagacatcattttattttagcatttgaaaggtatcat |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26958378 |
gcagaaggctggattttgttcagatggtgacggcttctataagtctaacagggagtggttgggaagacatcattttattttagcatttgaaaggtatcat |
26958279 |
T |
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| Q |
201 |
ttct |
204 |
Q |
| |
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|||| |
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|
| T |
26958278 |
ttct |
26958275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 30 - 205
Target Start/End: Complemental strand, 26843936 - 26843761
Alignment:
| Q |
30 |
ctttactctaacatacatattttgctgacatcatttacgcatcagttggcaaatgcaatgctcaatgagaagcagaaggctggattttgttcagatagtg |
129 |
Q |
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||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| | ||||| |||||||||||||||| ||||||||||||| | ||| |
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| T |
26843936 |
ctttactctaacacacacattttgctgatatcatttacgcatcagttggcaaataccatgctgaatgagaagcagaaggttggattttgttcaactggtg |
26843837 |
T |
|
| Q |
130 |
acggcttctataagtctaacagggagtggttgggaagacatcattttattttagcatttgaaaggtatcatttctg |
205 |
Q |
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| |||||||||||||| || |||||||||||||||| || |||| |||||||||||||||||||||||| |||||| |
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| T |
26843836 |
atggcttctataagtccaagagggagtggttgggaaaacgtcatgttattttagcatttgaaaggtatcgtttctg |
26843761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 18458204 - 18458135
Alignment:
| Q |
132 |
ggcttctataagtctaacagggagtggttgggaagacatcattttattttagcatttgaaaggtatcatt |
201 |
Q |
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||||||||| |||| || |||||||||||||||| | |||||| ||||||||||||||||||||||||| |
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| T |
18458204 |
ggcttctatgagtccaagagggagtggttgggaaagcgtcatttcattttagcatttgaaaggtatcatt |
18458135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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