View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15271_low_11 (Length: 304)
Name: NF15271_low_11
Description: NF15271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15271_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 1402869 - 1403145
Alignment:
| Q |
1 |
cttcttgaagatcttcaactatctaatatacactttgacccttccgctcgtttctcttctttatatcgtaaacaacaattaagatgctcaagcttaaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1402869 |
cttcttgaagatcttcaactatctaatatacactttgacccttccgctcgtttctcttctttatatcgtaaacaacaattaagatgctcaagcttaaaaa |
1402968 |
T |
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| Q |
101 |
ggttgaacaaagcagatataacctatcatggttgctattttatggtgaaatcactttcaaatgtggagtttctacgcatacaactatgcaaggtttgatg |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1402969 |
ggttgaacaaagcagatataaccgatcatggttgctattttatggtgaaatcactttcaaatgtggagtttctacgcatacaactatgcaaggtttgatg |
1403068 |
T |
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| Q |
201 |
atgcatgccaatgaaaaagaataatgtgataaatttctatttttaattttcgcgaatttcaccctattattttaata |
277 |
Q |
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| T |
1403069 |
atgcatgccaatgaaaaagaataatgtgataaatttctatttttaattttcgcgaatttcaccctattattttaata |
1403145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 1399174 - 1399452
Alignment:
| Q |
1 |
cttcttgaagatcttcaactatctaatatacactttgacccttccgctcgtttctcttctttatatcgtaaacaacaattaagatgctcaagcttaaaaa |
100 |
Q |
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| T |
1399174 |
cttcttgaagatcttcaactatctaatatacactttggcccttccgctcgtttctcttctctatatcgtaaccaacaattaagcggctcaagcttaaaaa |
1399273 |
T |
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| Q |
101 |
ggttgaacaaagcagatataacctatcatggttgctattttatggtgaaatcactttcaaatgtggagtttctacgcatacaactatgcaaggtttgatg |
200 |
Q |
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| T |
1399274 |
ggttgaacaaagcagatataaccgaccatgattgctattttatggtgaaatcactttcaaatgtggagtttctacgcatacaactatgcaaggtttgatg |
1399373 |
T |
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| Q |
201 |
atgcatgccaatgaaaaagaataatgtgataaatttctatttttaattttcgcgaatttcaccctattattttaatactg |
280 |
Q |
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| T |
1399374 |
atgcatgccaatgaaaaa-aataatgtgataaatttctatttttaatttttgcaaattttaccctatatttttaatactg |
1399452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 975025 - 974971
Alignment:
| Q |
133 |
tgctattttatggtgaaatcactttcaaatgtggagtttctacgcatacaactat |
187 |
Q |
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| T |
975025 |
tgctattttccggtgaaatcactttcaaatttggagtttctacgcataaaactat |
974971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 965756 - 965702
Alignment:
| Q |
133 |
tgctattttatggtgaaatcactttcaaatgtggagtttctacgcatacaactat |
187 |
Q |
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||||||||| ||||||||||||||||||| |||| ||| ||| ||||||||||| |
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| T |
965756 |
tgctattttccggtgaaatcactttcaaatttggaatttttacacatacaactat |
965702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 409824 - 409865
Alignment:
| Q |
146 |
tgaaatcactttcaaatgtggagtttctacgcatacaactat |
187 |
Q |
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| T |
409824 |
tgaaatcgctttcaaatttggagtttctacgtatacaactat |
409865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 10117318 - 10117267
Alignment:
| Q |
146 |
tgaaatcactttcaaatgtggagtttctacgcatacaactatgcaaggtttg |
197 |
Q |
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| T |
10117318 |
tgaaagcactttcaaatttggagtttctaggcatacaactattcaaggtttg |
10117267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 1446197 - 1446151
Alignment:
| Q |
146 |
tgaaatcactttcaaatgtggagtttctacgcatacaactatgcaag |
192 |
Q |
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||||| ||||||||||||||||||||||||||||| |||||| |||| |
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| T |
1446197 |
tgaaagcactttcaaatgtggagtttctacgcataaaactatacaag |
1446151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 1459600 - 1459552
Alignment:
| Q |
146 |
tgaaatcactttcaaatgtggagtttctacgcatacaactatgcaaggt |
194 |
Q |
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| T |
1459600 |
tgaaagcactttcaaatgtggagtttctacacataaaactatccaaggt |
1459552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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