View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15271_low_12 (Length: 265)
Name: NF15271_low_12
Description: NF15271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15271_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 46955512 - 46955260
Alignment:
| Q |
1 |
tccttgtggcaaccaccattacgcatcaaaactgcagcagaaatatttggaaatatcctctgcataagtatgtaagctgcatcttcttgagaacccgttt |
100 |
Q |
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| T |
46955512 |
tccttgtggcaaccaccattacgcatcaaaactgcagcagaaatatttggaaatatcctctgcataagtatgtaagctgcatcttcttgagaacccgttt |
46955413 |
T |
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| Q |
101 |
tctgcaattttatgagggtgtctcgcactgcatcaccataaatattgtttcctgaaagataattacagctcatttaatataattttcaacgaagtcggag |
200 |
Q |
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| T |
46955412 |
tctgcaattttatgagggtgtctcgcactgcatcaccataaatattgtttcctgaaagataattacagctcatttaatataattttcaacaaagtcgg-- |
46955315 |
T |
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| Q |
201 |
agagcagaaagttagatcacgttttaggggtggtagtacctcctccttctctctg |
255 |
Q |
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| T |
46955314 |
agagcagaaagttagatcacgttttaggggtggtagtacctcctccttctctctg |
46955260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 48 - 167
Target Start/End: Complemental strand, 46948461 - 46948342
Alignment:
| Q |
48 |
tggaaatatcctctgcataagtatgtaagctgcatcttcttgagaacccgttttctgcaattttatgagggtgtctcgcactgcatcaccataaatattg |
147 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| ||| || | ||||| || | | |||| |||||||||||| |
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| T |
46948461 |
tggaaatatcctctgcataagtatgtaagcggcatcttcttgagaacctggtttctgtaatcttttaagggtctccctaagatcatcgccataaatattg |
46948362 |
T |
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| Q |
148 |
tttcctgaaagataattaca |
167 |
Q |
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| T |
46948361 |
tttcctgaaaagtaattaca |
46948342 |
T |
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