View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15271_low_2 (Length: 523)
Name: NF15271_low_2
Description: NF15271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15271_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 19 - 512
Target Start/End: Complemental strand, 4133178 - 4132685
Alignment:
| Q |
19 |
actatcgaaaggcgtgtggtaatattatcaaagtgtcaagttgttattagctagaaggtgttgtggaagtggactgatgtgaggaactaattggttagta |
118 |
Q |
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| T |
4133178 |
actatcgaaaggcgtgtggtaatattatcaaagtgtcaagttgttattagctagaaggtgttgtggaagtggactgatgtgaggaactaattggttagta |
4133079 |
T |
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| Q |
119 |
gcagtaaaatttgaatcggaagggtctgatggtgtggctatctaaaccgttgcaacatatgttgcttccagatttgtggaattagcaacaagggatatac |
218 |
Q |
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| T |
4133078 |
gcagtaaaatttgaatcggaagggtctgatggtgtggctatctaaaccattgcaacatatgttgcttccagatttgtggaattagcaacaagggatatac |
4132979 |
T |
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| Q |
219 |
aagaaattggaaatgcatcttggtgttatctgtgtggagtgtaattcaaaggtcgctataaagttttggtgtgtataactatgctattttgcggtcttgt |
318 |
Q |
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| T |
4132978 |
aagaaattggaaatgcatcttggtgttatctgtgtggagtgtaattcaaaggtcgctataaagttttggtgtgtataactatgctattttgcggtcttgt |
4132879 |
T |
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| Q |
319 |
attctggcgcagcacgttgatgtctttctcagcagagtgcagaaacgattgggaatatttgtgctctgactattggattatttctctttatggagggtgt |
418 |
Q |
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| T |
4132878 |
attttggcgcagcatgttgatgtctttctcagcagagtgcagaaacgattgggaatatttgtgctctgactattggattatttctctttatggagggtgt |
4132779 |
T |
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| Q |
419 |
gactttgagccaatagttctcaaacttcaatgaatgtgattcgtgagaattggaagtagctagcttttcattttgtgattgtagttcgttctgt |
512 |
Q |
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| T |
4132778 |
gactttgagccaatagttctcaaacttcaatgaatgtgattcgtgagaattggaagtagctagcttttcattttgcgattgtagttcgttctgt |
4132685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 287
Target Start/End: Original strand, 43142144 - 43142220
Alignment:
| Q |
211 |
ggatatacaagaaattggaaatgcatcttggtgttatctgtgtggagtgtaattcaaaggtcgctataaagttttgg |
287 |
Q |
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| T |
43142144 |
ggatatacaagaaattggaattacatcttggtactatctgtgtgtagtgaattagaaagctcggtgtaaagttttgg |
43142220 |
T |
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