View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15271_low_3 (Length: 456)
Name: NF15271_low_3
Description: NF15271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15271_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 8244124 - 8244392
Alignment:
| Q |
19 |
cttacctagcaagtgacaagaacaaatgaatggtgacagaatgagcatcttcaaattctaaaaattacaggtacgactgaactatgaaatcaaacagaag |
118 |
Q |
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| T |
8244124 |
cttacctagcaagtgacaagaacaaatgaatggtgacagaatgagcatcttcaaattctaaaaattacatgtacgactgaactatgaaatcaaacagaag |
8244223 |
T |
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| Q |
119 |
ttagtttttctctgttatcaaagaatgatgctaaatatcttatggctaaaattttcacctaatgaccaagtagaccaatccagg-taactatggcctcaa |
217 |
Q |
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| T |
8244224 |
ttagtttttctctgttatcaaagaatgatcctaaatatcttatggctaaaattttcacctaatgaccaagtagaccaatccaggttaactatggcctcaa |
8244323 |
T |
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| Q |
218 |
atgaaaccattgtagagtactattttgttcctcagttaaaaaatgagcaaaatttgtgcatgactgttt |
286 |
Q |
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| T |
8244324 |
atgaaaccattgtagagtactattttgttcctcagttaaaaaatgagcaaaatttgtgcatgactgttt |
8244392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 312 - 443
Target Start/End: Original strand, 8244390 - 8244521
Alignment:
| Q |
312 |
tttgtttcaaaatacttctgcgcaaacccatcaagttcaatacaaaccgcaacccaagtgcagacaatcttcattttctcaagcatacgaaaatacactc |
411 |
Q |
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| T |
8244390 |
tttgttccaaaatacttctgcgcaaacccatcaagttcaatacaaaccgcaacccaagtgcagacaatcttcattttctcaaacatacgaaaatacactc |
8244489 |
T |
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| Q |
412 |
aagttacatgaccttgaacccttttgtatgca |
443 |
Q |
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| T |
8244490 |
aagttacatgaccttgaacccttttgtatgca |
8244521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 284 - 375
Target Start/End: Original strand, 12832890 - 12832987
Alignment:
| Q |
284 |
ttttatttccaatctggaacatgctgaat------ttgtttcaaaatacttctgcgcaaacccatcaagttcaatacaaaccgcaacccaagtgcaga |
375 |
Q |
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| T |
12832890 |
ttttatttccaatctagaacatgttgaataaaaatttgttccgaaatacttctgtgcaaacccgacaacttcaatagaaaccgcaatccaagagcaga |
12832987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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