View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15271_low_9 (Length: 318)
Name: NF15271_low_9
Description: NF15271
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15271_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 24 - 271
Target Start/End: Original strand, 40646619 - 40646866
Alignment:
| Q |
24 |
taaacccacacgtgcaagtaccacaatcacacgtgcaaccaccaaaacaaaaacatcatcattttccgacaacccttcaacctcatacgccggttcaacc |
123 |
Q |
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| T |
40646619 |
taaacccacacgtgcaagtaccacaatcacacgtgcaaccaccaaaacaaaaacatcatcattttccgacaacccttcaacctcatacgccggttcaacc |
40646718 |
T |
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| Q |
124 |
ggattccatctctcaaccgatacatcaatctcaagcagaacatccttaacctctcttcgcaactcactcccagaaaacccaaacatctacgacttctccg |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40646719 |
ggattccatctctcaaccgatacatcaatctcaagcagaacatccttaacctctcttcgcaactcactcccagaaaacccaaacatctacgacttctccg |
40646818 |
T |
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| Q |
224 |
aaatctgttccgccacaaacaacttcctctccaaacgctactcttcct |
271 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40646819 |
aaatctgttccgccacaaataacttcctctccaaacgctactcttcct |
40646866 |
T |
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