View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15272_high_1 (Length: 516)

Name: NF15272_high_1
Description: NF15272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15272_high_1
NF15272_high_1
[»] chr3 (14 HSPs)
chr3 (162-516)||(50304112-50304456)
chr3 (15-116)||(50303965-50304066)
chr3 (421-516)||(11267044-11267139)
chr3 (355-500)||(53714487-53714629)
chr3 (418-500)||(49161715-49161797)
chr3 (354-394)||(11267695-11267735)
chr3 (355-394)||(50305477-50305516)
chr3 (438-500)||(30593819-30593881)
chr3 (352-390)||(31891255-31891293)
chr3 (354-394)||(1127363-1127403)
chr3 (355-391)||(44384514-44384550)
chr3 (355-394)||(10343330-10343369)
chr3 (355-394)||(44993762-44993801)
chr3 (355-392)||(23379332-23379369)
[»] chr7 (18 HSPs)
chr7 (427-516)||(29511790-29511879)
chr7 (431-500)||(36845109-36845178)
chr7 (355-394)||(36661685-36661724)
chr7 (355-391)||(37692844-37692880)
chr7 (355-394)||(29511311-29511350)
chr7 (355-391)||(19431090-19431126)
chr7 (355-387)||(28868831-28868863)
chr7 (434-509)||(1484021-1484095)
chr7 (354-389)||(43551146-43551181)
chr7 (355-389)||(34827790-34827824)
chr7 (355-389)||(38315784-38315818)
chr7 (453-502)||(328309-328358)
chr7 (355-392)||(34367362-34367399)
chr7 (355-392)||(37693571-37693608)
chr7 (355-391)||(28869786-28869822)
chr7 (355-391)||(40905797-40905833)
chr7 (350-394)||(41713834-41713878)
chr7 (355-391)||(45761792-45761828)
[»] chr1 (13 HSPs)
chr1 (355-516)||(13536888-13537044)
chr1 (355-500)||(45597624-45597766)
chr1 (418-508)||(38150016-38150106)
chr1 (355-391)||(4530193-4530229)
chr1 (355-403)||(22425522-22425569)
chr1 (355-403)||(22862601-22862648)
chr1 (354-391)||(22424795-22424832)
chr1 (355-392)||(51129373-51129410)
chr1 (353-392)||(4530920-4530959)
chr1 (355-394)||(4626349-4626388)
chr1 (355-389)||(13536281-13536315)
chr1 (357-391)||(22861876-22861910)
chr1 (354-388)||(51609380-51609414)
[»] chr8 (10 HSPs)
chr8 (355-502)||(5432845-5432985)
chr8 (355-392)||(8491468-8491505)
chr8 (355-391)||(511455-511491)
chr8 (355-391)||(45163129-45163165)
chr8 (434-509)||(2707572-2707646)
chr8 (434-509)||(37785008-37785082)
chr8 (355-389)||(29184190-29184224)
chr8 (355-389)||(35237965-35237999)
chr8 (355-391)||(788484-788520)
chr8 (355-391)||(8492454-8492490)
[»] chr5 (9 HSPs)
chr5 (418-500)||(42650816-42650898)
chr5 (356-394)||(18669867-18669905)
chr5 (353-403)||(19854334-19854383)
chr5 (355-392)||(6354696-6354733)
chr5 (355-391)||(6353684-6353720)
chr5 (355-391)||(19855073-19855109)
chr5 (355-395)||(41785490-41785530)
chr5 (355-392)||(39949492-39949529)
chr5 (355-383)||(41784622-41784650)
[»] chr2 (15 HSPs)
chr2 (416-498)||(23875297-23875379)
chr2 (437-500)||(6084949-6085012)
chr2 (354-391)||(6198915-6198952)
chr2 (355-394)||(5142563-5142602)
chr2 (355-391)||(5141848-5141884)
chr2 (355-387)||(17946841-17946873)
chr2 (355-391)||(38065546-38065582)
chr2 (355-394)||(30902182-30902221)
chr2 (355-389)||(1442352-1442386)
chr2 (352-386)||(9370955-9370989)
chr2 (355-392)||(2992866-2992903)
chr2 (355-392)||(17947947-17947984)
chr2 (355-391)||(6197915-6197951)
chr2 (445-509)||(23989291-23989354)
chr2 (355-403)||(30901384-30901431)
[»] chr4 (13 HSPs)
chr4 (447-508)||(22256381-22256442)
chr4 (355-394)||(49708734-49708773)
chr4 (355-394)||(55879794-55879833)
chr4 (353-387)||(32893602-32893636)
chr4 (355-387)||(49346106-49346138)
chr4 (355-391)||(49708019-49708055)
chr4 (355-391)||(50708992-50709028)
chr4 (357-403)||(17088719-17088764)
chr4 (357-403)||(17096694-17096739)
chr4 (355-392)||(17979125-17979162)
chr4 (354-391)||(37142724-37142761)
chr4 (355-391)||(5826244-5826280)
chr4 (355-391)||(34956284-34956320)
[»] chr6 (4 HSPs)
chr6 (355-403)||(6841957-6842004)
chr6 (353-392)||(1528559-1528598)
chr6 (357-394)||(1529420-1529457)
chr6 (354-391)||(6841231-6841268)
[»] scaffold0070 (2 HSPs)
scaffold0070 (435-509)||(2604-2678)
scaffold0070 (355-394)||(2716-2755)
[»] scaffold0041 (1 HSPs)
scaffold0041 (355-391)||(44185-44221)


Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 162 - 516
Target Start/End: Original strand, 50304112 - 50304456
Alignment:
Q  162 gtgattgttcatctccccc-ttacatgttcaaatcaatcataatatatatcatcgaaagcttgtttccggtgatagattttcatatttcggtaaa-tgtc 259  Q
    ||||||||||||||||||| ||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50304112 gtgattgttcatctccccccttatatgttcaaatcaatcata-------tcatcgaaagcttgtttccggtgatagattttcatatttcggtaaaatgtc 50304204  T
Q  260 gtattttatggaggttacttgagcaatcaccaaataaaaaggtgacatttcttagggacaacccaaagataaagttggagaagcctttgctatagggtgg 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50304205 gtattttatggaggttacttgagcaatcaccaaataaaaaggtgacattttttagggacaacccaaagataaagttggagaagcctttgctatagggtgg 50304304  T
Q  360 catttagggtgggtgagggaaagaatttcccaccactaggaaagatannnnnnnnnaccattagatcaaaaaaggaccataataatatcatagtctctca 459  Q
    |||||||||||||||||||||| |||||||||||| ||| |||||||         |||||||||||||||||||||||||||||||||  |||||||||    
T  50304305 catttagggtgggtgagggaaataatttcccacca-tagaaaagata--ttttttaaccattagatcaaaaaaggaccataataatatc--agtctctca 50304399  T
Q  460 acattagattatttttacatcatcttccatcatccttctctcttccctctatgtctc 516  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50304400 acattatattatttttccatcatcttccatcatccttctctcttccctctatgtctc 50304456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 50303965 - 50304066
Alignment:
Q  15 aaaatattatcaattaatcacaatcatttgactaatactttatacatcttcaaaatttcattgaagaaaaatggtttttaactcaagccatatattatgt 114  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  50303965 aaaatattatcaattaatcacaatcgtttgactaatactttatacatcttcaaaatttcattgaagaaaaatggtgtttaacgcaagccatatattatgt 50304064  T
Q  115 gc 116  Q
    ||    
T  50304065 gc 50304066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 421 - 516
Target Start/End: Original strand, 11267044 - 11267139
Alignment:
Q  421 tagatcaaaaaaggaccataataatatcatagtctctcaacattagattatttttacatcatcttccatcatccttctctcttccctctatgtctc 516  Q
    ||||||||| || ||||||| || ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  11267044 tagatcaaagaaagaccatagtattatcatagtctctcaacattatattatttttacatcatctttcatcatccttctctcttccctctatgtctc 11267139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 355 - 500
Target Start/End: Original strand, 53714487 - 53714629
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccaccactaggaaagatannnnnnnnnaccattagatcaaaaaaggaccataataatatcatagtc 454  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||         ||  || ||||||| || ||||||| || ||||||||||    
T  53714487 ggtggcatttagggtgggtgagggaaagaatttcccacca-tgggaaagatacttttta--acggttggatcaaagaaagaccatagtattatcatagtc 53714583  T
Q  455 tctcaacattagattatttttacatcatcttccatcatccttctct 500  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  53714584 tctcaacattatattatttttacattatcttccatcatccttctct 53714629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 418 - 500
Target Start/End: Complemental strand, 49161797 - 49161715
Alignment:
Q  418 cattagatcaaaaaaggaccataataatatcatagtctctcaacattagattatttttacatcatcttccatcatccttctct 500  Q
    ||||||||||   ||||| ||||||| ||||||||||| |||||| ||||||||||||| || ||||||||||||||||||||    
T  49161797 cattagatcatgtaaggaacataatattatcatagtctttcaacactagattatttttatattatcttccatcatccttctct 49161715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 354 - 394
Target Start/End: Complemental strand, 11267735 - 11267695
Alignment:
Q  354 gggtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  11267735 gggtggcatttagggtgggtgagggaaagaatttcctacca 11267695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 50305516 - 50305477
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  50305516 ggtggcatttagggtgggtgaggaaaagaatttcccacca 50305477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 500
Target Start/End: Original strand, 30593819 - 30593881
Alignment:
Q  438 ataataatatcatagtctctcaacattagattatttttacatcatcttccatcatccttctct 500  Q
    |||||| ||||||| ||||| ||||||||||||||||||||  || |||||||||| ||||||    
T  30593819 ataatattatcatactctctaaacattagattatttttacaatatgttccatcatctttctct 30593881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 390
Target Start/End: Original strand, 31891255 - 31891293
Alignment:
Q  352 tagggtggcatttagggtgggtgagggaaagaatttccc 390  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  31891255 tagggcggcatttagggtgggtgagggaaagaatttccc 31891293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 394
Target Start/End: Original strand, 1127363 - 1127403
Alignment:
Q  354 gggtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    |||||||||||||||||||||||||||| | ||||||||||    
T  1127363 gggtggcatttagggtgggtgagggaaaaagtttcccacca 1127403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 44384514 - 44384550
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||||| |||||||||||||    
T  44384514 ggtggcatttagggtgggtgaggaaaagaatttccca 44384550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 10343330 - 10343369
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    ||||||||||||||||||||||||||||| ||| ||||||    
T  10343330 ggtggcatttagggtgggtgagggaaagatttttccacca 10343369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 44993801 - 44993762
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  44993801 ggtggcatttagggtgggtgagggaaagagtttcctacca 44993762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 23379332 - 23379369
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccac 392  Q
    ||||||||||||||||||| ||||||||| ||||||||    
T  23379332 ggtggcatttagggtgggtaagggaaagattttcccac 23379369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 427 - 516
Target Start/End: Complemental strand, 29511879 - 29511790
Alignment:
Q  427 aaaaaaggaccataataatatcatagtctctcaacattagattatttttacatcatcttccatcatccttctctcttccctctatgtctc 516  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  29511879 aaaaaagaatcataataatatcatagtctctcaacattagattatttttacatcatcttccatcatctttctctcttccctctatgtctc 29511790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 431 - 500
Target Start/End: Complemental strand, 36845178 - 36845109
Alignment:
Q  431 aaggaccataataatatcatagtctctcaacattagattatttttacatcatcttccatcatccttctct 500  Q
    ||||| ||||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||    
T  36845178 aaggaacataatattatcatagtccctcaacactagattatttttacattatcttccatcatccttctct 36845109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 36661685 - 36661724
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36661685 ggtggcatttagggtgggtgagggaaagaatttcccacca 36661724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 37692844 - 37692880
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    |||||||||||||||||||||||||||||||||||||    
T  37692844 ggtggcatttagggtgggtgagggaaagaatttccca 37692880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 29511311 - 29511350
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  29511311 ggtggcatttagggtgggtgagggaaagaatttctcacca 29511350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 19431090 - 19431126
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||||||||||| |||||||    
T  19431090 ggtggcatttagggtgggtgagggaaagagtttccca 19431126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 28868831 - 28868863
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaattt 387  Q
    |||||||||||||||||||||||||||||||||    
T  28868831 ggtggcatttagggtgggtgagggaaagaattt 28868863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 509
Target Start/End: Original strand, 1484021 - 1484095
Alignment:
Q  434 gaccataataatatcatagtctctcaacattagattatttttacatcatcttccatcatccttctctcttccctct 509  Q
    ||||||| || ||||||| ||| | ||||||||||||||||||||  || |||||||||| |||||| ||||||||    
T  1484021 gaccatagtattatcatactctttaaacattagattatttttacactatgttccatcatctttctct-ttccctct 1484095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 389
Target Start/End: Original strand, 43551146 - 43551181
Alignment:
Q  354 gggtggcatttagggtgggtgagggaaagaatttcc 389  Q
    |||||||||||||||||||||||||||||| |||||    
T  43551146 gggtggcatttagggtgggtgagggaaagagtttcc 43551181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 389
Target Start/End: Complemental strand, 34827824 - 34827790
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcc 389  Q
    ||||||||||||||||||||||||||||| |||||    
T  34827824 ggtggcatttagggtgggtgagggaaagagtttcc 34827790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 389
Target Start/End: Original strand, 38315784 - 38315818
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcc 389  Q
    ||||||||||||||||||||||||||||| |||||    
T  38315784 ggtggcatttagggtgggtgagggaaagagtttcc 38315818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 502
Target Start/End: Original strand, 328309 - 328358
Alignment:
Q  453 tctctcaacattagattatttttacatcatcttccatcatccttctctct 502  Q
    |||||||||| |||||||||||||||  || ||||||||| |||||||||    
T  328309 tctctcaacactagattatttttacactatgttccatcattcttctctct 328358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 34367362 - 34367399
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccac 392  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  34367362 ggtggcatttagggtgggtgagggaaagagttttccac 34367399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 37693608 - 37693571
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccac 392  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  37693608 ggtggtatttagggtgggtgagggaaagaattccccac 37693571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 28869822 - 28869786
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||| ||||||| |||||||    
T  28869822 ggtggcatttagggtgggtgatggaaagattttccca 28869786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 40905833 - 40905797
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  40905833 ggtggcatttagggtgggtgaggcaaagagtttccca 40905797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 350 - 394
Target Start/End: Complemental strand, 41713878 - 41713834
Alignment:
Q  350 tatagggtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    |||| ||||||||||||||||||||||||||| | ||| ||||||    
T  41713878 tataaggtggcatttagggtgggtgagggaaaaagttttccacca 41713834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 45761792 - 45761828
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  45761792 ggtggcatttagggtgggtgaaggaaagaattcccca 45761828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 355 - 516
Target Start/End: Complemental strand, 13537044 - 13536888
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccaccactaggaaagatannnnnnnnnaccattagatcaaaaaaggaccataataatatcatagtc 454  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||         | |||||||||||| || ||||   ||  ||| ||||||    
T  13537044 ggtggcatttagggtgggtgagggaaagaatttcccacca-tgggaaagatatttttta--agcattagatcaaagaaagaccggtat--tatgatagtc 13536950  T
Q  455 tctcaacattagattatttttacatcatcttccatcatccttctctcttccctctatgtctc 516  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13536949 tctcaacgttatattatttttacatcatcttccatcatccttctctcttccctctatgtctc 13536888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 355 - 500
Target Start/End: Original strand, 45597624 - 45597766
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccaccactaggaaagatannnnnnnnnaccattagatcaaaaaaggaccataataatatcatagtc 454  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||         |   || ||||||| || ||||||| || ||||||||||    
T  45597624 ggtggcatttagggtgggtgagggaaagaatttcccacca-taggaaagatacttttta--atggttggatcaaagaaagaccatagtattatcatagtc 45597720  T
Q  455 tctcaacattagattatttttacatcatcttccatcatccttctct 500  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||||    
T  45597721 tctcaacattatattatttttacattatcttccatcatccttctct 45597766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 508
Target Start/End: Original strand, 38150016 - 38150106
Alignment:
Q  418 cattagatcaaaaaaggaccataataatatcatagtctctcaacattagattatttttacatcatcttccatcatccttctctcttccctc 508  Q
    |||||||||||| || ||| || ||||||||||||||||||||||||| ||| |||||  || ||||||||||||| || ||||| |||||    
T  38150016 cattagatcaaataatgactatgataatatcatagtctctcaacattaaattctttttctattatcttccatcatcattttctctcccctc 38150106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 4530193 - 4530229
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    |||||||||||||||||||||||||||||||||||||    
T  4530193 ggtggcatttagggtgggtgagggaaagaatttccca 4530229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 22425569 - 22425522
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccaccactaggaaag 403  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  22425569 ggtggcatttaggatgggtgagggaaagaatttcccacca-taggaaag 22425522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 22862648 - 22862601
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccaccactaggaaag 403  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  22862648 ggtggcatttaggatgggtgagggaaagaatttcccacca-taggaaag 22862601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 22424795 - 22424832
Alignment:
Q  354 gggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  22424795 gggtggcatttagggtgggtgagggaaagaattcccca 22424832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 51129373 - 51129410
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccac 392  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  51129373 ggtggcatttagggtgggtgagggaaagagtttcccac 51129410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 392
Target Start/End: Complemental strand, 4530959 - 4530920
Alignment:
Q  353 agggtggcatttagggtgggtgagggaaagaatttcccac 392  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  4530959 agggtggtatttagggtgggtgagggaaagaattccccac 4530920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 4626388 - 4626349
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    |||||||||||||||||| |||||||| ||||||||||||    
T  4626388 ggtggcatttagggtgggagagggaaaaaatttcccacca 4626349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 389
Target Start/End: Original strand, 13536281 - 13536315
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcc 389  Q
    ||||||||||||||||||||||||||||| |||||    
T  13536281 ggtggcatttagggtgggtgagggaaagagtttcc 13536315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 391
Target Start/End: Original strand, 22861876 - 22861910
Alignment:
Q  357 tggcatttagggtgggtgagggaaagaatttccca 391  Q
    |||||||||||||||||||||||||||||| ||||    
T  22861876 tggcatttagggtgggtgagggaaagaattcccca 22861910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 354 - 388
Target Start/End: Original strand, 51609380 - 51609414
Alignment:
Q  354 gggtggcatttagggtgggtgagggaaagaatttc 388  Q
    |||||||||||||||||||||||||||||| ||||    
T  51609380 gggtggcatttagggtgggtgagggaaagagtttc 51609414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 6e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 355 - 502
Target Start/End: Original strand, 5432845 - 5432985
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccaccactaggaaagatannnnnnnnnaccattagatcaaaaaaggaccataataatatcatagtc 454  Q
    |||||||||||||||||||||||||||||||||| || |     ||||||||         |||||||||||||| || ||| ||  |||||||||||||    
T  5432845 ggtggcatttagggtgggtgagggaaagaatttctcatc-----gaaagatacttttaa--accattagatcaaataaagactatggtaatatcatagtc 5432937  T
Q  455 tctcaacattagattatttttacatcatcttccatcatccttctctct 502  Q
    ||||||||||||||||||||| ||| |||||||||||| |||||||||    
T  5432938 tctcaacattagattattttttcattatcttccatcatgcttctctct 5432985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 8491468 - 8491505
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccac 392  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  8491468 ggtggcatttagggtgggtgagggaaagattttcccac 8491505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 511491 - 511455
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||| |||||||||||||||    
T  511491 ggtggcatttagggtgggtgaaggaaagaatttccca 511455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 45163165 - 45163129
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||||||||||| |||||||    
T  45163165 ggtggcatttagggtgggtgagggaaagattttccca 45163129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 509
Target Start/End: Complemental strand, 2707646 - 2707572
Alignment:
Q  434 gaccataataatatcatagtctctcaacattagattatttttacatcatcttccatcatccttctctcttccctct 509  Q
    ||||||| || ||||||| ||| | |||||||||||||||| ||| ||| |||||||||| |||||| ||||||||    
T  2707646 gaccatagtattatcatactctttaaacattagattattttcacaccatgttccatcatctttctct-ttccctct 2707572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 509
Target Start/End: Original strand, 37785008 - 37785082
Alignment:
Q  434 gaccataataatatcatagtctctcaacattagattatttttacatcatcttccatcatccttctctcttccctct 509  Q
    ||||||| || ||||||| ||| | ||||||||||||||||||||  || |||||||||| |||||| ||||||||    
T  37785008 gaccatagtattatcatactctttaaacattagattatttttacactatgttccatcatctttctct-ttccctct 37785082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 389
Target Start/End: Original strand, 29184190 - 29184224
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcc 389  Q
    ||||||||||||||||||||||||||||| |||||    
T  29184190 ggtggcatttagggtgggtgagggaaagagtttcc 29184224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 389
Target Start/End: Original strand, 35237965 - 35237999
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcc 389  Q
    ||||||||||||||||||||||||||||| |||||    
T  35237965 ggtggcatttagggtgggtgagggaaagagtttcc 35237999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 788520 - 788484
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    |||| |||||||||||||||||||||||| |||||||    
T  788520 ggtgacatttagggtgggtgagggaaagagtttccca 788484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 8492490 - 8492454
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||| ||||||||||||||| |||||||    
T  8492490 ggtggcatttaggatgggtgagggaaagattttccca 8492454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 418 - 500
Target Start/End: Original strand, 42650816 - 42650898
Alignment:
Q  418 cattagatcaaaaaaggaccataataatatcatagtctctcaacattagattatttttacatcatcttccatcatccttctct 500  Q
    ||||||||||   ||||| ||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||    
T  42650816 cattagatcatgtaaggaacataatattatcatagtctttcaacactagattatttttacattatcttccatcatccttctct 42650898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 18669867 - 18669905
Alignment:
Q  356 gtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  18669867 gtggcatttagggtgggtgagggaaagagtttcccacca 18669905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 403
Target Start/End: Original strand, 19854334 - 19854383
Alignment:
Q  353 agggtggcatttagggtgggtgagggaaagaatttcccaccactaggaaag 403  Q
    ||||||||||||||  |||||||||||||||||||||||||| ||||||||    
T  19854334 agggtggcatttagaatgggtgagggaaagaatttcccacca-taggaaag 19854383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 6354733 - 6354696
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccac 392  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  6354733 ggtggcatttagggtgggtgagggaaagattttcccac 6354696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 6353684 - 6353720
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||||||||||| |||||||    
T  6353684 ggtggcatttagggtgggtgagggaaagattttccca 6353720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 19855109 - 19855073
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    |||||||||||||||||||||||||||||||| ||||    
T  19855109 ggtggcatttagggtgggtgagggaaagaattcccca 19855073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 395
Target Start/End: Complemental strand, 41785530 - 41785490
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccaccac 395  Q
    ||||||||||||||||||||||||||||| |||| ||||||    
T  41785530 ggtggcatttagggtgggtgagggaaagagtttctcaccac 41785490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Original strand, 39949492 - 39949529
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccac 392  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  39949492 ggtggcatttagggtgggtgagggaaagagttttccac 39949529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 383
Target Start/End: Original strand, 41784622 - 41784650
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaaga 383  Q
    |||||||||||||||||||||||||||||    
T  41784622 ggtggcatttagggtgggtgagggaaaga 41784650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 416 - 498
Target Start/End: Original strand, 23875297 - 23875379
Alignment:
Q  416 accattagatcaaaaaaggaccataataatatcatagtctctcaacattagattatttttacatcatcttccatcatccttct 498  Q
    ||||||||||||   ||||| ||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||    
T  23875297 accattagatcatgtaaggaacataatattatcatagtctttcaacactagattatttttacattatcttccatcatccttct 23875379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 437 - 500
Target Start/End: Original strand, 6084949 - 6085012
Alignment:
Q  437 cataataatatcatagtctctcaacattagattatttttacatcatcttccatcatccttctct 500  Q
    ||||||| ||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||    
T  6084949 cataatattatcatagtctttcaacactagattatttttacattatcttccatcatccttctct 6085012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 6198952 - 6198915
Alignment:
Q  354 gggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||||||||||||||||||||    
T  6198952 gggtggcatttagggtgggtgagggaaagaatttccca 6198915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 5142602 - 5142563
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  5142602 ggtggcatttagggtgggtgagggaaagaattttccacca 5142563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 5141848 - 5141884
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    |||||||||||||||||||||||||||||||| ||||    
T  5141848 ggtggcatttagggtgggtgagggaaagaattcccca 5141884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 17946841 - 17946873
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaattt 387  Q
    |||||||||||||||||||||||||||||||||    
T  17946841 ggtggcatttagggtgggtgagggaaagaattt 17946873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 38065546 - 38065582
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||||||||||| |||||||    
T  38065546 ggtggcatttagggtgggtgagggaaagagtttccca 38065582  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 30902221 - 30902182
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    ||||||||||||||||||||||||||||| ||||| ||||    
T  30902221 ggtggcatttagggtgggtgagggaaagagtttcctacca 30902182  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 355 - 389
Target Start/End: Original strand, 1442352 - 1442386
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcc 389  Q
    ||||||||||||||||||||||||||||| |||||    
T  1442352 ggtggcatttagggtgggtgagggaaagagtttcc 1442386  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 352 - 386
Target Start/End: Original strand, 9370955 - 9370989
Alignment:
Q  352 tagggtggcatttagggtgggtgagggaaagaatt 386  Q
    |||||||||||||||||||||| ||||||||||||    
T  9370955 tagggtggcatttagggtgggtaagggaaagaatt 9370989  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 2992903 - 2992866
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccac 392  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  2992903 ggtggcatttagggtgggtgagggaaagagttttccac 2992866  T

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Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 17947984 - 17947947
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccac 392  Q
    ||||||||||||| ||||||||||||||| ||||||||    
T  17947984 ggtggcatttaggatgggtgagggaaagagtttcccac 17947947  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 6197915 - 6197951
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||| |||||||||||| ||||    
T  6197915 ggtggcatttagggtgggtaagggaaagaattcccca 6197951  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 509
Target Start/End: Complemental strand, 23989354 - 23989291
Alignment:
Q  445 tatcatagtctctcaacattagattatttttacatcatcttccatcatccttctctcttccctct 509  Q
    ||||||| ||| | |||||||||||||||| |||| || |||||||||| |||||| ||||||||    
T  23989354 tatcatactctttaaacattagattattttcacattatgttccatcatctttctct-ttccctct 23989291  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 403
Target Start/End: Original strand, 30901384 - 30901431
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccaccactaggaaag 403  Q
    |||||||||||||||||||||||| |||| ||||| |||| ||||||||    
T  30901384 ggtggcatttagggtgggtgagggcaagagtttcctacca-taggaaag 30901431  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 447 - 508
Target Start/End: Complemental strand, 22256442 - 22256381
Alignment:
Q  447 tcatagtctctcaacattagattatttttacatcatcttccatcatccttctctcttccctc 508  Q
    ||||||||||||||||||||||| |||||  || |||||||||||||||||||||| |||||    
T  22256442 tcatagtctctcaacattagattctttttctattatcttccatcatccttctctctcccctc 22256381  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 49708773 - 49708734
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49708773 ggtggcatttagggtgggtgagggaaagaatttcccacca 49708734  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 355 - 394
Target Start/End: Original strand, 55879794 - 55879833
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  55879794 ggtggcatttagggtgggtgagggaaataatttcccacca 55879833  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 353 - 387
Target Start/End: Original strand, 32893602 - 32893636
Alignment:
Q  353 agggtggcatttagggtgggtgagggaaagaattt 387  Q
    |||||||||||||||||||||||||||||||||||    
T  32893602 agggtggcatttagggtgggtgagggaaagaattt 32893636  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 387
Target Start/End: Original strand, 49346106 - 49346138
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaattt 387  Q
    |||||||||||||||||||||||||||||||||    
T  49346106 ggtggcatttagggtgggtgagggaaagaattt 49346138  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 49708019 - 49708055
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    |||||||||||||||||||||||||||||||| ||||    
T  49708019 ggtggcatttagggtgggtgagggaaagaattcccca 49708055  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 50708992 - 50709028
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||||| |||||||||||||    
T  50708992 ggtggcatttagggtgggtgaggcaaagaatttccca 50709028  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 17088764 - 17088719
Alignment:
Q  357 tggcatttagggtgggtgagggaaagaatttcccaccactaggaaag 403  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||    
T  17088764 tggcatttagggtgggtgagggaaagaattctccacca-taggaaag 17088719  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 357 - 403
Target Start/End: Complemental strand, 17096739 - 17096694
Alignment:
Q  357 tggcatttagggtgggtgagggaaagaatttcccaccactaggaaag 403  Q
    ||||||||||||||||||||||||||||||  |||||| ||||||||    
T  17096739 tggcatttagggtgggtgagggaaagaattctccacca-taggaaag 17096694  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 17979162 - 17979125
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccac 392  Q
    ||||||||||||||||||||||||||||| ||| ||||    
T  17979162 ggtggcatttagggtgggtgagggaaagagttttccac 17979125  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 354 - 391
Target Start/End: Complemental strand, 37142761 - 37142724
Alignment:
Q  354 gggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  37142761 gggtggcatttagggtgggtgggggaaagagtttccca 37142724  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Complemental strand, 5826280 - 5826244
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    |||| |||||||||||||||||||||||| |||||||    
T  5826280 ggtgacatttagggtgggtgagggaaagagtttccca 5826244  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 34956284 - 34956320
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  34956284 ggtggcatttagggtgggtgaggcaaagagtttccca 34956320  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 403
Target Start/End: Complemental strand, 6842004 - 6841957
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccaccactaggaaag 403  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  6842004 ggtggcatttaggatgggtgagggaaagaatttcccacca-taggaaag 6841957  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 353 - 392
Target Start/End: Original strand, 1528559 - 1528598
Alignment:
Q  353 agggtggcatttagggtgggtgagggaaagaatttcccac 392  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  1528559 agggtggcatttagggtgggtgagggaaagagtttcccac 1528598  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 357 - 394
Target Start/End: Complemental strand, 1529457 - 1529420
Alignment:
Q  357 tggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  1529457 tggcatttagggtgggtgagggaaagagtttcccacca 1529420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 354 - 391
Target Start/End: Original strand, 6841231 - 6841268
Alignment:
Q  354 gggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  6841231 gggtggcatttagggtgggtgagggaaagaattcccca 6841268  T

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Target: scaffold0070 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 435 - 509
Target Start/End: Complemental strand, 2678 - 2604
Alignment:
Q  435 accataataatatcatagtctctcaacattagattatttttacatcatcttccatcatccttctctcttccctct 509  Q
    |||||| || ||| |||||||||||| |||| ||| |||||| || |||||||||||| |||||| |||||||||    
T  2678 accatagtattataatagtctctcaatattatattctttttatattatcttccatcatacttctcacttccctct 2604  T

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Target: scaffold0070; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 394
Target Start/End: Complemental strand, 2755 - 2716
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttcccacca 394  Q
    ||||||||||||||| |||||||||||||||| |||||||    
T  2755 ggtggcatttagggttggtgagggaaagaattccccacca 2716  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 391
Target Start/End: Original strand, 44185 - 44221
Alignment:
Q  355 ggtggcatttagggtgggtgagggaaagaatttccca 391  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  44185 ggtggcatttagggtgggtgaggcaaagagtttccca 44221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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