View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15272_high_4 (Length: 237)

Name: NF15272_high_4
Description: NF15272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15272_high_4
NF15272_high_4
[»] chr3 (3 HSPs)
chr3 (13-229)||(9460060-9460276)
chr3 (13-229)||(9471301-9471517)
chr3 (13-229)||(16486046-16486263)
[»] chr1 (2 HSPs)
chr1 (13-229)||(5723468-5723684)
chr1 (13-229)||(44600495-44600711)


Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 9460060 - 9460276
Alignment:
Q  13 cagagacggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaa 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9460060 cagaggcggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaa 9460159  T
Q  113 acagggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgacactgaagaaagaaaaaggttttacaaagt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9460160 acagggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaagt 9460259  T
Q  213 tctttttgatgatgatg 229  Q
    |||||||||||||||||    
T  9460260 tctttttgatgatgatg 9460276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 9471301 - 9471517
Alignment:
Q  13 cagagacggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaa 112  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9471301 cagaggcggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaa 9471400  T
Q  113 acagggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgacactgaagaaagaaaaaggttttacaaagt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  9471401 acagggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttacaaagt 9471500  T
Q  213 tctttttgatgatgatg 229  Q
    |||||||||||||||||    
T  9471501 tctttttgatgatgatg 9471517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 16486046 - 16486263
Alignment:
Q  13 cagagacggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaa 112  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16486046 cagaggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaa 16486145  T
Q  113 acagggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgacactgaagaaagaaaaaggttttacaaag- 211  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| ||||     
T  16486146 acagggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaacaagctgggagggttgcttgaccctgaagaaagaaaaaggttttataaagt 16486245  T
Q  212 ttctttttgatgatgatg 229  Q
    ||||||||||||||||||    
T  16486246 ttctttttgatgatgatg 16486263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 5723468 - 5723684
Alignment:
Q  13 cagagacggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaa 112  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5723468 cagaggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaa 5723567  T
Q  113 acagggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgacactgaagaaagaaaaaggttttacaaagt 212  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  5723568 acagggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgaccctgaagaaagaaaaaggttttataaagt 5723667  T
Q  213 tctttttgatgatgatg 229  Q
    ||||||| |||||||||    
T  5723668 tcttttttatgatgatg 5723684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 44600495 - 44600711
Alignment:
Q  13 cagagacggcgacttgttaatatcgaaaagaggagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaa 112  Q
    ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44600495 cagaggcggcgacttgttaatatcgaaaagaagagaaataaaggtcttcctttgaatagggtggatgaggatcacatgaagggtagaagaaggagaagaa 44600594  T
Q  113 acagggaagtgtttgatgaagatgatgaggttgagcgagaaaatggtaataagctgggagggttgcttgacactgaagaaagaaaaaggttttacaaagt 212  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||    
T  44600595 acagggaagtgtctgatgaagatgatgaggttgagcgagaaaatggtaacaagctgggagggttgcttgaccctgaagaaagaaaaaggttttataaagt 44600694  T
Q  213 tctttttgatgatgatg 229  Q
    |||||||||||||||||    
T  44600695 tctttttgatgatgatg 44600711  T

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