View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15272_low_1 (Length: 705)
Name: NF15272_low_1
Description: NF15272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15272_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 681; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 1 - 689
Target Start/End: Original strand, 14282451 - 14283139
Alignment:
| Q |
1 |
ccacgacagacacaccaacatagctatacaaaagaaacaatgcagcggaaacttgcaatggcatcaaccatataggatgaaactgcatcatcaaatctga |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282451 |
ccacgacagacacgccaacatagctatacaaaagaaacaatgcagcggaaacttgcaatggcatcaaccatataggatgaaactgcatcatcaaatctga |
14282550 |
T |
|
| Q |
101 |
gagttgttgagcatcaacagccatgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaagccctttttgtaaactgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282551 |
gagttgttgagcatcaacagccatgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaagccctttttgtaaactgaa |
14282650 |
T |
|
| Q |
201 |
gtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaagtacttcaagtgattttgccgcaaaaaggatcg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282651 |
gtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaagtacttcaagtgattttgccgcaaaaaggatcg |
14282750 |
T |
|
| Q |
301 |
atatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacatacataacacaaagctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282751 |
atatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacatacataacacaaagctt |
14282850 |
T |
|
| Q |
401 |
aatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcctctggttttggccaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282851 |
aatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcctctggttttggccaa |
14282950 |
T |
|
| Q |
501 |
ttgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggtaacctttattaagca |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14282951 |
ttgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggtaacctttattaagca |
14283050 |
T |
|
| Q |
601 |
aagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctatcggtggaaaccgatggatat |
689 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14283051 |
aagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctatcggtggaaactgatggatat |
14283139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 14 - 678
Target Start/End: Original strand, 14320613 - 14321277
Alignment:
| Q |
14 |
accaacatagctatacaaaagaaacaatgcagcggaaacttgcaatggcatcaaccatataggatgaaactgcatcatcaaatctgagagttgttgagca |
113 |
Q |
| |
|
|||||||||||| |||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
14320613 |
accaacatagctgtacataagagccaatgcagcaccaacttgcaatggcatcaaccatataggatgaaactgcatcatcaaatctgagagctgttgagca |
14320712 |
T |
|
| Q |
114 |
tcaacagccatgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaagccctttttgtaaactgaagtgattatgctcg |
213 |
Q |
| |
|
||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14320713 |
tcaacagccatgtgattaacaatttggccagttccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaactgaagtgattatgctcg |
14320812 |
T |
|
| Q |
214 |
aacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaagtacttcaagtgattttgccgcaaaaaggatcgatatcaaaacaat |
313 |
Q |
| |
|
|||||| ||||||||| ||||| |||||||||||||| || |||||| |||||||||||||| ||||||||| |||||||||| ||||||||||||| |
|
|
| T |
14320813 |
aacgaataagcataccgagtttttgagagtggaagttaaattgatgaacactaagtacttcaactgattttgctgcaaaaaggacacatatcaaaacaat |
14320912 |
T |
|
| Q |
314 |
accttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacatacataacacaaagcttaatgattgcaagg |
413 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| ||||| | |
|
|
| T |
14320913 |
accttcactagtcgtactatctttccttgatgtgaaatcaacaaaactttgaatcaacaagggaccaacatacataacacaaagcctaatgactgcaatg |
14321012 |
T |
|
| Q |
414 |
aagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcctctggttttggccaattgttttgaaaaa |
513 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
14321013 |
aagcccgtgaaagctatttgtttccaaaaacacctaaaaagggtaactccaactggatgcttactgttttcctctggttttggccaattgctttgaaaaa |
14321112 |
T |
|
| Q |
514 |
gttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggtaacctttattaagcaaagggttcatcca |
613 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||| || |||||||||||||| |
|
|
| T |
14321113 |
gttcagacattttttctgctctaaaatcaagaggaagtgaaggtacatcttctagtttaaggggtgttttgtaacctttattgagtaaagggttcatcca |
14321212 |
T |
|
| Q |
614 |
ataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctatcggtggaaa |
678 |
Q |
| |
|
| |||| ||||||| ||||||| ||| ||||| |||||||||||||||||||||||||| |||| |
|
|
| T |
14321213 |
aaaccaccctgttttagacaaaaatgacgaacaagcataaggactcaaagttctatcggtcgaaa |
14321277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 3 - 689
Target Start/End: Original strand, 14304211 - 14304897
Alignment:
| Q |
3 |
acgacagacacaccaacatagctatacaaaagaaacaatgcagcggaaacttgcaatggcatcaaccatataggatgaaactgcatcatcaaatctgaga |
102 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||| ||||||||||| |||||| |||||||||| ||| ||||||||||||||| ||||||| ||||||| |
|
|
| T |
14304211 |
acgacagatacaccaacatagctatacataagagccaatgcagcggcaacttgtaatggcatcatccaaataggatgaaactgcttcatcaagtctgaga |
14304310 |
T |
|
| Q |
103 |
gttgttgagcatcaacagccatgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaagccctttttgtaaactgaagt |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
14304311 |
gttgttgagcatcaacagccatgtgattcacaatctgtccagttccatgagcctgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagt |
14304410 |
T |
|
| Q |
203 |
gattatgctcgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaagtacttcaagtgattttgccgcaaaaaggatcgat |
302 |
Q |
| |
|
|||||||||||| |||||||||||||| ||||||||||| ||||||||||| |||||| |||||||||||||| |||||||| |||||||||| || |
|
|
| T |
14304411 |
gattatgctcgagcgaacaagcatacctagtttctgagaatggaagttgaattgatgaacactaagtacttcaacagattttgctgcaaaaaggacacat |
14304510 |
T |
|
| Q |
303 |
atcaaaacaataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacatacataacacaaagcttaa |
402 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||||| ||||||||||||||||||||||| ||||| ||| ||||| |||||||||||||||||| | | |
|
|
| T |
14304511 |
atcaaaacaataccttcactagtcggactatctttctgtgatgtgaaatcaacaaaactctgaatcagcaatggaccgacatacataacacaaagcctca |
14304610 |
T |
|
| Q |
403 |
tgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcctctggttttggccaatt |
502 |
Q |
| |
|
||| |||||| ||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
14304611 |
tgaatgcaagaaagccagtgaaaactatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactgttttcctctggtttcggccaatt |
14304710 |
T |
|
| Q |
503 |
gttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggtaacctttattaagcaaa |
602 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||| |||||||| || ||| |
|
|
| T |
14304711 |
gttttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaaggggtgtttggtagcctttattgagtaaa |
14304810 |
T |
|
| Q |
603 |
gggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctatcggtggaaaccgatggatat |
689 |
Q |
| |
|
|| |||| |||| |||| ||||||||||||||| ||||||| ||||||||||||||||||||||||| | |||| |||||||||| |
|
|
| T |
14304811 |
ggattcagccaaaaccaccctgttttggacaaaaatgaagaatgggcataaggactcaaagttctatcgattgaaatcgatggatat |
14304897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 398; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 12 - 689
Target Start/End: Original strand, 25885293 - 25885970
Alignment:
| Q |
12 |
acaccaacatagctatacaaaagaaacaatgcagcggaaacttgcaatggcatcaaccatataggatgaaactgcatcatcaaatctgagagttgttgag |
111 |
Q |
| |
|
||||||||||||||||||| |||| |||||| | | |||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||| |
|
|
| T |
25885293 |
acaccaacatagctatacataagagccaatgccacagctacttgcaatggcatcaaccatatagggtgaagctgcatcatcatatctgagagttgttgag |
25885392 |
T |
|
| Q |
112 |
catcaacagccatgtgattcacaatctgtccagttccatgagcttgtcttgaagaacttgacaaccttaagccctttttgtaaactgaagtgattatgct |
211 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||| |||||||| |
|
|
| T |
25885393 |
catcaacagccatgtgattcactatctgtcctgttccatgagcttgtcttgaagaacttgacaacctcagaccctttttgtaaaccgaagtaattatgct |
25885492 |
T |
|
| Q |
212 |
cgaacgaacaagcataccaagtttctgagagtggaagttgaactgatgactactaagtacttcaagtgattttgccgcaaaaaggatcgatatcaaaaca |
311 |
Q |
| |
|
|||||||| ||||||||| | |||||| |||||||||||| | |||||| ||| || ||||||| ||||||||| |||||||||||| ||||||||| | |
|
|
| T |
25885493 |
cgaacgaataagcataccgattttctgcgagtggaagttgtattgatgaacactcagcacttcaactgattttgctgcaaaaaggatcaatatcaaaata |
25885592 |
T |
|
| Q |
312 |
ataccttcactactcgtaccatctttccttgatgtgaaatcaacaaaactctcaatcaacaagggaccaacatacataacacaaagcttaatgattgcaa |
411 |
Q |
| |
|
|||||||||||| | |||| |||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||| |||| ||||||| |
|
|
| T |
25885593 |
ataccttcactagtagtactatctttccttgatgtgaaatcaacaaaactctgaatcaacagtggaccaatatacataacacaaagcctaatcattgcaa |
25885692 |
T |
|
| Q |
412 |
ggaagcccgtaaaagctatgtgtttccaaaaacacctaaaaagggtaactccaactggatgcttactattttcctctggttttggccaattgttttgaaa |
511 |
Q |
| |
|
||||||| || ||||||||||||||||||||||||||||| | || ||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25885693 |
ggaagccagtgaaagctatgtgtttccaaaaacacctaaataaggctactataactggatgcttactattttcctctggttttggccaattgtttataaa |
25885792 |
T |
|
| Q |
512 |
aagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggtaacctttattaagcaaagggttcatc |
611 |
Q |
| |
|
| |||||||||||||||||||||||| || ||||||||| |||| |||||||||||||||||||| |||| |||||||||||||| ||||||||||||| |
|
|
| T |
25885793 |
attttctgacattttttctgctctaaattcaagaggaagtgaaggaacatcttctagtttaaggggagttttgtaacctttattaatcaaagggttcatc |
25885892 |
T |
|
| Q |
612 |
caataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctatcggtggaaaccgatggatat |
689 |
Q |
| |
|
||| ||||||||||||||||||||| |||||||| ||||||||||||||| ||| ||| || | |||||||| |||| |
|
|
| T |
25885893 |
caaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccatcagttggaaccgatgtatat |
25885970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 51 - 662
Target Start/End: Original strand, 44349177 - 44349787
Alignment:
| Q |
51 |
acttgcaatggcatcaaccatataggatgaaactgcatcatcaaatctgagagttgttgagcatcaacagccatgtgattcacaatctgtccagttccat |
150 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||| ||||||| |
|
|
| T |
44349177 |
acttgcaatggcatcaaccatatagggtgaagctgcatcatcatatctgagagttgttgagcatcaacagacatgtgattcactatctgtcctgttccat |
44349276 |
T |
|
| Q |
151 |
gagcttgtcttgaagaacttgacaaccttaagccctttttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtggaagtt |
250 |
Q |
| |
|
||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||| ||||||||| | |||||| ||||||||||| |
|
|
| T |
44349277 |
gagcttgtcttgaagaacttgacaatcttagaccctttttgtaaaccaaagtgattatgctcgaacgaataagcataccgattttctgcgagtggaagtt |
44349376 |
T |
|
| Q |
251 |
gaactgatgactactaagtacttcaagtgattttgccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgtgaaa |
350 |
Q |
| |
|
| | ||||||| ||| |||||||||| ||||||||| |||||||||||| ||||||||| |||| |||||||| | |||| ||||||||||||||| ||| |
|
|
| T |
44349377 |
gtattgatgac-actcagtacttcaactgattttgctgcaaaaaggatcaatatcaaaataatatcttcactagtagtactatctttccttgatgtaaaa |
44349475 |
T |
|
| Q |
351 |
tcaacaaaactctcaatcaacaagggaccaacatacataacacaaagcttaatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaacacctaa |
450 |
Q |
| |
|
||||||||||||| |||||||| ||||||| |||||||||||||||| |||| | |||||||||||| || | |||||||||||||||||||||||||| |
|
|
| T |
44349476 |
tcaacaaaactctgaatcaacagtggaccaatatacataacacaaagcctaatcactgcaaggaagccagtgatagctatgtgtttccaaaaacacctaa |
44349575 |
T |
|
| Q |
451 |
aaagggtaactccaactggatgcttactattttcctctggttttggccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaag |
550 |
Q |
| |
|
| | || || ||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || |||||||| |
|
|
| T |
44349576 |
ataaggctaccataactggatgcttactgttttcctctggttttggccaattgtttataaaattttctgacattttttctgctctaaattcaagaggaag |
44349675 |
T |
|
| Q |
551 |
taaaggtacatcttctagtttaaggggtgtttggtaacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggca |
650 |
Q |
| |
|
| |||| | |||||||||||||||||| |||| |||||| ||||||| |||||||||||||||| ||||||||||||||||||||| |||||||| ||| |
|
|
| T |
44349676 |
tgaaggaatatcttctagtttaaggggagttttgtaaccgttattaatcaaagggttcatccaaaaccaaactgttttggacaaaaatgaagaaccagca |
44349775 |
T |
|
| Q |
651 |
taaggactcaaa |
662 |
Q |
| |
|
|||||||||||| |
|
|
| T |
44349776 |
taaggactcaaa |
44349787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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