View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15272_low_3 (Length: 426)

Name: NF15272_low_3
Description: NF15272
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15272_low_3
NF15272_low_3
[»] chr4 (2 HSPs)
chr4 (1-409)||(18342980-18343387)
chr4 (149-195)||(22101579-22101625)
[»] chr2 (1 HSPs)
chr2 (21-409)||(36840753-36841142)
[»] scaffold0002 (4 HSPs)
scaffold0002 (1-253)||(163982-164233)
scaffold0002 (297-409)||(164272-164384)
scaffold0002 (3-198)||(277909-278104)
scaffold0002 (332-409)||(277711-277788)
[»] scaffold1779 (2 HSPs)
scaffold1779 (3-204)||(323-524)
scaffold1779 (334-409)||(662-737)
[»] chr3 (3 HSPs)
chr3 (33-255)||(18374946-18375165)
chr3 (297-409)||(46699230-46699342)
chr3 (332-360)||(18375226-18375254)
[»] scaffold0702 (1 HSPs)
scaffold0702 (3-124)||(7081-7202)
[»] chr8 (2 HSPs)
chr8 (3-124)||(35195166-35195287)
chr8 (297-409)||(11542907-11543019)
[»] chr6 (1 HSPs)
chr6 (297-409)||(14249342-14249454)
[»] chr5 (1 HSPs)
chr5 (1-120)||(10258318-10258437)
[»] chr7 (2 HSPs)
chr7 (101-253)||(46634306-46634463)
chr7 (299-360)||(46634212-46634273)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 18343387 - 18342980
Alignment:
Q  1 gcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccgg 100  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343387 gcatatttccagacaaacctgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccgg 18343288  T
Q  101 caaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctt 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343287 caaaatactttatgaaatgggaggggtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctt 18343188  T
Q  201 tcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaattgttggtttcnnnnnnnnnnnnnngaacacagaatannnnnnnnactt 300  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||               |||||||||||        ||||    
T  18343187 tcagaataatcattagaacgaaataggtctttagtatgaa-aaaatggtaattgttggtttctttttttttttttgtaacacagaatattttttttactt 18343089  T
Q  301 caactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgtattc 400  Q
    ||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18343088 caactttttgactgaaagatagaaaaaaatgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgtattc 18342989  T
Q  401 gaatcatag 409  Q
    |||||||||    
T  18342988 gaatcatag 18342980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 22101625 - 22101579
Alignment:
Q  149 ggctatttcaatagcggcatccaaaatgcctatacgaactcaattca 195  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||    
T  22101625 ggctatttcaatagcggcatccaaaatgtctatacgaactcaattca 22101579  T

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Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 21 - 409
Target Start/End: Complemental strand, 36841142 - 36840753
Alignment:
Q  21 gttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgg 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36841142 gttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgg 36841043  T
Q  121 gaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacg 220  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36841042 gaggggtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacg 36840943  T
Q  221 aaataggtctttagtatgaaaaaaatggtaattgttggtttc-nnnnnnnnnnnnnngaacacagaatannnnnnnnacttcaactttttgactgaaaga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||               ||||||||||||        |||||||||||||||||||||||    
T  36840942 aaataggtctttagtatgaaaaaaatggtaattgttggtttctttttttttttttttgaacacagaatattttttttacttcaactttttgactgaaaga 36840843  T
Q  320 tagnnnnnnntgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgtattcgaatcatag 409  Q
    |||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36840842 tagaaaaaaatgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgtattcgaatcatag 36840753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 163982 - 164233
Alignment:
Q  1 gcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccgg 100  Q
    ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  163982 gcatatttccagacaaacctgttacattaagatctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccga 164081  T
Q  101 caaaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctt 200  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  164082 caaaatactttatgaaatgggcggggtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctataagaactcaattcattctt 164181  T
Q  201 tcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaatt 253  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||| |||||    
T  164182 tcagaataatcattagatcgaaataggtctttagtat-aaaaaaatgataatt 164233  T

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Target: scaffold0002; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 297 - 409
Target Start/End: Original strand, 164272 - 164384
Alignment:
Q  297 acttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgt 396  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  164272 acttcaactttttgactgaaagatagtaaaaaatgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgtgaattgatctgt 164371  T
Q  397 attcgaatcatag 409  Q
    |||||||||||||    
T  164372 attcgaatcatag 164384  T

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Target: scaffold0002; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 3 - 198
Target Start/End: Complemental strand, 278104 - 277909
Alignment:
Q  3 atatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggca 102  Q
    |||||||| |||||||| |||||| ||||||| || ||||| |||||||| |||||||| || || ||||||||||||||||| || |||||||| ||      
T  278104 atatttcccgacaaaccggttacactaagacccacggaaacacgtatgggctcgggaaaggggtcccccgaatattgggtagccgttgttaaaccaggtc 278005  T
Q  103 aaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattc 198  Q
      ||||||||||||||||| || ||  | |||| | ||||||||   ||||| || ||||||||    |||||||| ||||||| |||||| ||||    
T  278004 gtatactttatgaaatggggggagtatctgaaactgtagctagagcagctatctccatagcggccagtaaaatgcccatacgaagtcaatttattc 277909  T

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Target: scaffold0002; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 332 - 409
Target Start/End: Complemental strand, 277788 - 277711
Alignment:
Q  332 atatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgtattcgaatcatag 409  Q
    |||||||||||||||| |||  |||||||||||| || ||||| ||||| ||  ||||||||||||||||| ||||||    
T  277788 atatgattcaacctcagacccttttaaatgtagcagacaatagtggagctcgaaaattgatgtgtattcgagtcatag 277711  T

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Target: scaffold1779 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: scaffold1779
Description:

Target: scaffold1779; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 3 - 204
Target Start/End: Original strand, 323 - 524
Alignment:
Q  3 atatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggca 102  Q
    ||||||||||||||||| ||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  323 atatttccagacaaaccagttacggtaagacctacagaaacacgtatgggttcggggaaaggatctcccgagtattgggtagctgtcgttaaaccgggca 422  T
Q  103 aaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttc 202  Q
     |||||||||||||||| | || ||  | ||||||||||| ||||||||||||||||||||||| || ||||||||||||  ||| ||||||||| ||||    
T  423 gaatactttatgaaatgagtggagtagccgaaaatatagccagaaaggctatttcaatagcggcgtcaaaaatgcctataaaaacgcaattcattatttc 522  T
Q  203 ag 204  Q
    ||    
T  523 ag 524  T

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Target: scaffold1779; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 334 - 409
Target Start/End: Original strand, 662 - 737
Alignment:
Q  334 atgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgtattcgaatcatag 409  Q
    |||||||||||||| ||| |||| |||||||| ||||| ||||| ||||| |||||||||||||||||| ||||||    
T  662 atgattcaacctcagacccatttgaatgtagcagataacagcggggcccgagaattgatgtgtattcgagtcatag 737  T

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Target: chr3 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 33 - 255
Target Start/End: Original strand, 18374946 - 18375165
Alignment:
Q  33 cctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccag 132  Q
    |||||||||||| ||||||||||| |||||| |||| | || |||||  ||| ||| |||||||| | | ||||||||||||||||||| ||  |||||     
T  18374946 cctaccgaaacgagtatgggttcgagaaaagaatcttctga-tattgaatagttgttgttaaacctgactaaatactttatgaaatgggggg--tcccaa 18375042  T
Q  133 aaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtcttt 232  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||  ||||||||||||||| |||||    
T  18375043 aaaatatagctagaaagaatatttcaatagcggcatccaaaatgcctatacgaactcaatttattctttgagaataactattagaacgaaatagatcttt 18375142  T
Q  233 agtatgaaaaaaatggtaattgt 255  Q
    | |||||||||||||||||||||    
T  18375143 aatatgaaaaaaatggtaattgt 18375165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 46699342 - 46699230
Alignment:
Q  297 acttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgt 396  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46699342 acttcaactttttgactgaaagatagaaaaaaatgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgt 46699243  T
Q  397 attcgaatcatag 409  Q
    |||||||||||||    
T  46699242 attcgaatcatag 46699230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 360
Target Start/End: Original strand, 18375226 - 18375254
Alignment:
Q  332 atatgattcaacctcaaacctatttaaat 360  Q
    |||||||||||||||||||||||||||||    
T  18375226 atatgattcaacctcaaacctatttaaat 18375254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0702 (Bit Score: 106; Significance: 7e-53; HSPs: 1)
Name: scaffold0702
Description:

Target: scaffold0702; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 7081 - 7202
Alignment:
Q  3 atatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggca 102  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  7081 atatttccagacaaacctgttacagtaatacctaccgaaacgcgtatgggttcaggaaaagaatctcccgaatattgggtagctgtcgttaaacccggca 7180  T
Q  103 aaatactttatgaaatgggagg 124  Q
    ||||||||||||||||||||||    
T  7181 aaatactttatgaaatgggagg 7202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 106; Significance: 7e-53; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 35195166 - 35195287
Alignment:
Q  3 atatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggca 102  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||    
T  35195166 atatttccagacaaacctgttacagtaatacctaccgaaacgcgtatgggttcaggaaaagaatctcccgaatattgggtagctgtcgttaaacccggca 35195265  T
Q  103 aaatactttatgaaatgggagg 124  Q
    ||||||||||||||||||||||    
T  35195266 aaatactttatgaaatgggagg 35195287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 11543019 - 11542907
Alignment:
Q  297 acttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgt 396  Q
    ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11543019 acttcaactttttgactgaaagatagaaaaaaatgatatgattcaacctcaaacctatttaaatatagccgataatagcggagcccgcgaattgatgtgt 11542920  T
Q  397 attcgaatcatag 409  Q
    |||||||||||||    
T  11542919 attcgaatcatag 11542907  T

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Target: chr6 (Bit Score: 84; Significance: 9e-40; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 297 - 409
Target Start/End: Complemental strand, 14249454 - 14249342
Alignment:
Q  297 acttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgcgaattgatgtgt 396  Q
    ||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  14249454 acttcaactttttgactgaaagatagtaaaaaatgatatgattcaacctcaaacctatttaaatgtagccgataatagcggagcccgtgaattgatctgt 14249355  T
Q  397 attcgaatcatag 409  Q
    |||||||||||||    
T  14249354 attcgaatcatag 14249342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 120
Target Start/End: Original strand, 10258318 - 10258437
Alignment:
Q  1 gcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccgg 100  Q
    ||||| ||||||||||||  |||| |||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||||||| ||||| ||||    
T  10258318 gcataattccagacaaacttgttagagtaagacctactgaaacgtgtatgggtttgggaaacggatctcccgaatattgggtagctgtcattaaatccgg 10258417  T
Q  101 caaaatactttatgaaatgg 120  Q
     |||||||||||||||||||    
T  10258418 taaaatactttatgaaatgg 10258437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 101 - 253
Target Start/End: Complemental strand, 46634463 - 46634306
Alignment:
Q  101 caaaatactttatgaaatgggaggcgtcccagaaaa-tatagctagaaaggctatttcaatagcggc-----atccaaaatgcctatacgaactcaattc 194  Q
    ||||||| ||||||||||||||||  | ||| |||| |||||||||||| |||||||||||||| ||     |||||| |||||||||| |||  ||| |    
T  46634463 caaaatattttatgaaatgggagggattccaaaaaaatatagctagaaaagctatttcaatagcagcgcgacatccaagatgcctatacaaacctaat-c 46634365  T
Q  195 attctttcagaataatcattagaacgaaataggtctttagtatgaaaaaaatggtaatt 253  Q
    |||||||||||| ||| |||||||| ||||| ||||||||||| |||||||||||||||    
T  46634364 attctttcagaagaataattagaaccaaatatgtctttagtataaaaaaaatggtaatt 46634306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 360
Target Start/End: Complemental strand, 46634273 - 46634212
Alignment:
Q  299 ttcaactttttgactgaaagatagnnnnnnntgatatgattcaacctcaaacctatttaaat 360  Q
    ||||||||||||| ||||||||||       |||||||||||||||||||||||| ||||||    
T  46634273 ttcaactttttgattgaaagatagaaaaaaatgatatgattcaacctcaaacctacttaaat 46634212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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