View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15273_low_1 (Length: 571)
Name: NF15273_low_1
Description: NF15273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15273_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 9 - 548
Target Start/End: Original strand, 36825895 - 36826437
Alignment:
| Q |
9 |
agcacagaccttctgcacacgtgcaagcaaacgagtaagattactcttcaagcttctaacatgttcaagattcttagtactaacattcttggccaaagca |
108 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36825895 |
agcacacaccttctgcacacgtgcaagcaaacgagtaagattactcttcaagcttctaacatgttcaagattcttagtactaacattcttggccaaagca |
36825994 |
T |
|
| Q |
109 |
tccaacacaggataagcacctttctcaagttcagcaacatttttatccagatatgtacaaacaacttccaaagcaatctccaacacctgaaattcaaaag |
208 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36825995 |
tccaacacaggataagcacctttctcaagttcagcaacatttttatccagatatgtacaaacaacttccaaagcaatctccaacacctgaaattcaaaag |
36826094 |
T |
|
| Q |
209 |
gaagcggaagctcttcagcaccctcaggcacagactcatcaccgccaccagcacctccaagaagcttaggttgagtcttatgtggaagctgttgcctcaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36826095 |
gaagcggaagctcttcagcaccctcaggcacagactcatcaccgccaccagcacctccaagaagcttaggttgagtcttatgtggaagctgttgcctcaa |
36826194 |
T |
|
| Q |
309 |
ttgttcaacaaatggaagaacctcttgacgcaaaggatcaagcaataaaatctcttcagctgtaacaattgcttttataaactccaaattcacaaccatt |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36826195 |
ttgttcaacaaatggaagaacctcttgacgcaaaggatcaagcaataaaatctcttcagctgtaacaattgcttttataaactccaaattcacaaccatt |
36826294 |
T |
|
| Q |
409 |
gctttctctctcgctataaacac----aataaataaataattaagaaacacgaaaccctaattcataaactaattgaaattgtaagccctaaaaattgaa |
504 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36826295 |
gctttctctctcgctataaacacaataaataaataaataattaagaaacaagaaaccctaattcataaactaattgaaattgtaagccct-aaaattgaa |
36826393 |
T |
|
| Q |
505 |
ttaccgaggatattggaggaatgagagaagacagggccaagaat |
548 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36826394 |
ttaccgaggatattggaggaatgagagaagacagggccaagaat |
36826437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 328 - 537
Target Start/End: Original strand, 33433192 - 33433405
Alignment:
| Q |
328 |
acctcttgacgcaaaggatcaagcaataaaatctcttcagctgtaacaattgcttttataaactccaaattcacaaccattgctttctctctcgctataa |
427 |
Q |
| |
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|||||||||| |||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||||| ||| | |
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| T |
33433192 |
acctcttgacacaaaggatcaagtaacaaaatctctttcaatgtaacaattgcttttataaactccaaattcactaccatggctttctttctcgttatta |
33433291 |
T |
|
| Q |
428 |
acacaataaataaa----taattaagaaacacgaaaccctaattcataaacta-attgaaattgtaagccctaaaaattgaattaccgaggatattggag |
522 |
Q |
| |
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|||||||||||||| ||||||||||||| |||| ||||||||| |||||| ||||||||||||| |||| |||||||||||| |||||||||||||| |
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| T |
33433292 |
acacaataaataaagaattaattaagaaacatgaaatcctaattcacaaactagattgaaattgtaaaccct-aaaattgaattatcgaggatattggag |
33433390 |
T |
|
| Q |
523 |
gaatgagagaagaca |
537 |
Q |
| |
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||||||||||||||| |
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|
| T |
33433391 |
gaatgagagaagaca |
33433405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 8e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 328 - 537
Target Start/End: Original strand, 19251971 - 19252183
Alignment:
| Q |
328 |
acctcttgacgcaaaggatcaagcaataaaatctcttcagctgtaacaattgcttttataaactccaaattcacaaccattgctttctctctcgctataa |
427 |
Q |
| |
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|||||||||| |||||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||| ||||| ||||| | ||||| ||| | |
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| T |
19251971 |
acctcttgacacaaaggatcaagtaacaaaatctctttcaatgtaacagttgcttttataaactccaaattcactaccatggctttatttctcgttatta |
19252070 |
T |
|
| Q |
428 |
acac---aataaataaataattaagaaacacgaaaccctaattcataaacta-attgaaattgtaagccctaaaaattgaattaccgaggatattggagg |
523 |
Q |
| |
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|||| |||||| || ||||||| ||||| |||| ||||||||| |||||| ||||||||||||| |||| |||||||||||| ||||||||||||||| |
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| T |
19252071 |
acacaataataaagaattaattaataaacatgaaatcctaattcacaaactagattgaaattgtaaaccct-aaaattgaattatcgaggatattggagg |
19252169 |
T |
|
| Q |
524 |
aatgagagaagaca |
537 |
Q |
| |
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|||||||||||||| |
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|
| T |
19252170 |
aatgagagaagaca |
19252183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 403 - 448
Target Start/End: Original strand, 25442130 - 25442175
Alignment:
| Q |
403 |
accattgctttctctctcgctataaacacaataaataaataattaa |
448 |
Q |
| |
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||||| |||||||||| |||||| |||||||||||||| ||||||| |
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| T |
25442130 |
accatggctttctctcacgctattaacacaataaataattaattaa |
25442175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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