View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15273_low_2 (Length: 477)
Name: NF15273_low_2
Description: NF15273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15273_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 256 - 418
Target Start/End: Original strand, 42779538 - 42779690
Alignment:
| Q |
256 |
acttgcaacttgttataaccaaactcccatggaacaaagatacaaatccaac--aacacacacggcagtcccaaaagcccaaaaaagacatagacttaat |
353 |
Q |
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| T |
42779538 |
acttccaacttgttataaccaaactcgcatgaaacaaagatacaaatccaacaaaacgcacacggcagt--------cccaaaaaatac--agactaaat |
42779627 |
T |
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| Q |
354 |
gaaagcaatatgacaccaactaaatcaaaatcaacataactagatgccaggaacaagtacttcgt |
418 |
Q |
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| T |
42779628 |
gaaagca--atgacaacaactaaatcaaaatcaacgtaactagatgctaggaacaagtacttcgt |
42779690 |
T |
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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 378 - 426
Target Start/End: Complemental strand, 29555017 - 29554969
Alignment:
| Q |
378 |
tcaaaatcaacataactagatgccaggaacaagtacttcgtggctacac |
426 |
Q |
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| T |
29555017 |
tcaaaatcaacataactagatgccaggaacaagtacttcgtggccacac |
29554969 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 53
Target Start/End: Original strand, 24487381 - 24487416
Alignment:
| Q |
18 |
caaaccaagacaaattgaagaaccaaactaaaccca |
53 |
Q |
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| T |
24487381 |
caaaccaagacaaattgaaaaaccaaactaaaccca |
24487416 |
T |
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