View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15273_low_4 (Length: 360)
Name: NF15273_low_4
Description: NF15273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15273_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 79 - 340
Target Start/End: Original strand, 37495599 - 37495863
Alignment:
| Q |
79 |
tttagagaaagt-atgatgttttattatataaactatattttagtccaactcattaatctcttaa-gtannnnnnnn-ctagatattcatatgtgaatct |
175 |
Q |
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| T |
37495599 |
tttagagaaagtcatgatgttttattatataaattatattttaatccaactcattaatcacttaaagtatttttttttctagatattcatatgtgaatct |
37495698 |
T |
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| Q |
176 |
aactacacttaatttgatctaactctcactaaaaaatgtataggtctctactctacactagatattcagtatatttagtttaaattttaaccgatccttc |
275 |
Q |
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| T |
37495699 |
aactacacttaatttgatctaactctcactataaaatttataggtctctactctacactagatattcactatatttagtttaaattttaaccgatccttc |
37495798 |
T |
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| Q |
276 |
atggagaaaacacttaatactatgtgaattcatgatgcatgtgcattgccatatatagtagtcat |
340 |
Q |
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| T |
37495799 |
atggagaaaacacttaatactatgtgaattcatgatgcatgtgcattgccatatatagtagtcat |
37495863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 37495516 - 37495576
Alignment:
| Q |
1 |
caacaagcaagcattttcccatcgaatggagcgaccacatggatcaacttaagtcatgatg |
61 |
Q |
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| T |
37495516 |
caacaaccaaacatttttccaccaaatggagcgaccacatggatcaacttaaatcatgatg |
37495576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 105 - 137
Target Start/End: Original strand, 16971826 - 16971858
Alignment:
| Q |
105 |
tataaactatattttagtccaactcattaatct |
137 |
Q |
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| T |
16971826 |
tataaactatatttcagtccaactcattaatct |
16971858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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