View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15273_low_5 (Length: 269)
Name: NF15273_low_5
Description: NF15273
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15273_low_5 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 254
Target Start/End: Original strand, 4626956 - 4627209
Alignment:
| Q |
1 |
tattgcaagagttactctacttaatagctcattataaactttatattttatcaatccaactatcaaattaaaagatctttttgtgtatatcccactgaac |
100 |
Q |
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| T |
4626956 |
tattgcaagagttactctacttaatagcttattataaactttttattttttcaatccaactatcaaattaaaagatctttttgtgtatatcccactgaac |
4627055 |
T |
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| Q |
101 |
atgttttcataaaattttaaaattatttgacactttatgaaataactttatatgaacatataataagtttttaaggtgattaactctattcagaattact |
200 |
Q |
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| T |
4627056 |
atattttcataaaattttaaaattatttgacactttatgaaataacttcaaatgaacatataataagtttttaaggtgattaactctattcagaattact |
4627155 |
T |
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| Q |
201 |
cctagagtgtgtataagaatatatgagaaagaatgaacataaattgttaccttt |
254 |
Q |
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| T |
4627156 |
cctagagtgtgtataagaatatatgagaaagaatgaacataaattgttaccttt |
4627209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 121
Target Start/End: Original strand, 4623136 - 4623236
Alignment:
| Q |
20 |
cttaatagctcattataaactttatattttatcaatccaactatcaaattaaaagatctttttgtgtatatcccactgaacatgttttcataaaatttta |
119 |
Q |
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| T |
4623136 |
cttaataactcattgtaaacatcagattttatcaatccaaccgtcaaattaaaaattcttattgagtatat-caactcaacaagttttcataaaatttta |
4623234 |
T |
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| Q |
120 |
aa |
121 |
Q |
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|| |
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| T |
4623235 |
aa |
4623236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 7 - 79
Target Start/End: Complemental strand, 4298919 - 4298848
Alignment:
| Q |
7 |
aagagttactctacttaatagctcattataaactttatattttatcaatccaactatcaaattaaaagatctt |
79 |
Q |
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| T |
4298919 |
aagagttattccacttaatagctcattataaacctta-aatttatcaatccaactgccaaactaaaagatctt |
4298848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 3801 - 3736
Alignment:
| Q |
8 |
agagttactctacttaatagctcattataaactttatattttatcaatccaactatcaaattaaaa |
73 |
Q |
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| T |
3801 |
agagttactccacttaataccttattataaaccttaaatttgatcaattcaactgtcaaattaaaa |
3736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 72
Target Start/End: Original strand, 27794674 - 27794736
Alignment:
| Q |
10 |
agttactctacttaatagctcattataaactttatattttatcaatccaactatcaaattaaa |
72 |
Q |
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| T |
27794674 |
agttactctatttaataactcgttgtaaacattgaattttatcaatccaaccatcaaattaaa |
27794736 |
T |
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