View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15274_high_7 (Length: 277)
Name: NF15274_high_7
Description: NF15274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15274_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 54912027 - 54911770
Alignment:
| Q |
1 |
cttgacttaaccctcaagtagagaagaatagctcaagtctgaagtctgaatgcttgattgcgtatgtcatacaaagccaagtgcacatgattagcgtgta |
100 |
Q |
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| T |
54912027 |
cttgacttaaccctcaattagaaaagaatagctcaagtctgaagtctgaatgcttgattgcgtatgtcatacaaagccaagtgcacatgattagcgtgta |
54911928 |
T |
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| Q |
101 |
tcataaacaaatcatcccattgttttcccatctagtattcaaaacctgatttggatataccaatgaattaccacccgcattcctagtcaaagtttgtgct |
200 |
Q |
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| T |
54911927 |
tcataaacaaatcatcccattgttttcccatctagtattcaaaacctgatttggatataccaatgaattaccacccgcattcctagtcaaagtttgtgct |
54911828 |
T |
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| Q |
201 |
tgctccttagtcaaaacaacccctgtgtttgtctcattgctttatttccatttgatcc |
258 |
Q |
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| T |
54911827 |
tgctccttagtcaaaacaacccctgtgtttgtctcattgctttatttccatttgatcc |
54911770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 84 - 228
Target Start/End: Complemental strand, 54917309 - 54917164
Alignment:
| Q |
84 |
cacatgattagcgtgtatcataaacaaatcatcccattgttt-tcccatctagtattcaaaacctgatttggatataccaatgaattaccacccgcattc |
182 |
Q |
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|||||||||||||| ||||||| | |||||||||||||||| || ||||||||||||| | | |||||||||| || || |||||||| | ||| |
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| T |
54917309 |
cacatgattagcgtatatcatagataaatcatcccattgttaatcttgcctagtattcaaaaaccgttttggatatattaacgagttaccaccgactttc |
54917210 |
T |
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| Q |
183 |
ctagtcaaagtttgtgcttgctccttagtcaaaacaacccctgtgt |
228 |
Q |
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| T |
54917209 |
ctagtcaaagtttgtgtttgttcttttgtcaaagcaacacctgtgt |
54917164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 90 - 222
Target Start/End: Original strand, 54917977 - 54918110
Alignment:
| Q |
90 |
attagcgtgtatcataaacaaatcatcccattgttt-tcccatctagtattcaaaacctgatttggatataccaatgaattaccacccgcattcctagtc |
188 |
Q |
| |
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|||||| ||||||| | |||||||| ||||||||| ||||| ||||||||||||| | | |||||||| ||| || |||| ||| |||||| |||| |
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| T |
54917977 |
attagcatgtatcagagacaaatcaccccattgttcatcccacctagtattcaaaaatcgttatggatatatcaacgagttacaaccagcattcatagtg |
54918076 |
T |
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| Q |
189 |
aaagtttgtgcttgctccttagtcaaaacaaccc |
222 |
Q |
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||||||||||||||| | ||||||||||||||| |
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| T |
54918077 |
gaagtttgtgcttgctacctagtcaaaacaaccc |
54918110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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