View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15274_high_9 (Length: 250)
Name: NF15274_high_9
Description: NF15274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15274_high_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 231
Target Start/End: Complemental strand, 45012472 - 45012245
Alignment:
| Q |
4 |
ccaccaagttccacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgacatt |
103 |
Q |
| |
|
||||||||| ||||||||||| || | ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45012472 |
ccaccaagtctcacagtgcaccaaataccacagcattccagcagtaatattctctacggcaggatacactggaaaccatttccatgaattcagtgacatt |
45012373 |
T |
|
| Q |
104 |
atcattccactgtttttgacgtgcagaaaatttaatggacaagtgcaacttatcataactgataacaagtcttggtggatttccaaacaccaagcatttc |
203 |
Q |
| |
|
||||||||||||||||||| || ||| |||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45012372 |
gtcattccactgtttttgacttgtagacaatttaatggacaagtacagcttatcataactgataagaagtcttggtggatttccaaacaccaagcatttc |
45012273 |
T |
|
| Q |
204 |
ttaaaaagctttccaactatgagattat |
231 |
Q |
| |
|
||||||| || || || ||||| ||||| |
|
|
| T |
45012272 |
ttaaaaaactgtctaattatgaaattat |
45012245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 45018645 - 45018761
Alignment:
| Q |
1 |
ccaccaccaagttccacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45018645 |
ccaccaccaagttccacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgac |
45018744 |
T |
|
| Q |
101 |
attatcattccactgtt |
117 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
45018745 |
attatcattccactgtt |
45018761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 149; Significance: 8e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 15 - 231
Target Start/End: Complemental strand, 3173006 - 3172790
Alignment:
| Q |
15 |
cacagtgcaccgaaaatcacagtattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgacattatcattccact |
114 |
Q |
| |
|
||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
3173006 |
cacagtgcaccaaatatcacagcattccagcagtaatattctctactgcaggatacactggaaaccatttccatgaattcagtgatattgtcattccact |
3172907 |
T |
|
| Q |
115 |
gtttttgacgtgcagaaaatttaatggacaagtgcaacttatcataactgataacaagtcttggtggatttccaaacaccaagcatttcttaaaaagctt |
214 |
Q |
| |
|
||||||||| || ||| ||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
3172906 |
gtttttgacttgtagactatttaatggacaagtacagcttatcataactgataagaagtcttggtggatttccaaacaccaagcgtttcttaaaaaactg |
3172807 |
T |
|
| Q |
215 |
tccaactatgagattat |
231 |
Q |
| |
|
|| |||||||| ||||| |
|
|
| T |
3172806 |
tctaactatgaaattat |
3172790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University