View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15274_low_1 (Length: 591)
Name: NF15274_low_1
Description: NF15274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15274_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 475; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 25 - 574
Target Start/End: Original strand, 13514465 - 13515014
Alignment:
| Q |
25 |
tagtatatcaagaattttgtgaacccaaataannnnnnnctttaaaattcatttctcaatgtgaataataaaatggttccaacaacctgatattagttag |
124 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13514465 |
tagtatatcaagaattttgtgaacccaaataatttttttctttaaaattcatatctcaatgtgaataataaaatggttccaacaacctgatattagttag |
13514564 |
T |
|
| Q |
125 |
tcatcatctttatctaattagcaatctaaagtccaaacaatactgtaccnnnnnnngtctaaataatacaacttcagttcctataaatactagccataac |
224 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13514565 |
tcatcatctttatctaattagcaatctaaagtccaaacaatactgtaccaaaaaaagtctaaataatacaacttcagttcctataaatactagccataac |
13514664 |
T |
|
| Q |
225 |
tacattcataaaccacacattacgaccattatttgttatttcttaccttgcattttaatacattataccaccatgggtgtgttcaattttgaggatgaaa |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
13514665 |
tacattcataaaccacacattacgaccattatttgttatttcttacctagcattttaatacattataccatcatgggtgtgttcaattttgaggatgaaa |
13514764 |
T |
|
| Q |
325 |
ccacctctaatgtagctcctgctacactttacaaagctctagttacagattctgataaccttatcccaaaggttattgatgtcatcaagagtgttgaaat |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13514765 |
ccacctctaatgtagctcctgctacactttacaaagctctagttacagattctgataaccttatcccaaaggttattgatgtcatcaagagtgttgaaat |
13514864 |
T |
|
| Q |
425 |
tgttgaaggcaacggtggcgccggaaccatcaagaaacttacttttgttgaaggtcggtataaatatatttattttacttttattgtcaaatattaataa |
524 |
Q |
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| T |
13514865 |
tgttgaaggcaacggtggcgccggaaccatcaagaaacttacttttgttgaaggtcggtataaatatatttattttacttttattgtcaaatattaataa |
13514964 |
T |
|
| Q |
525 |
ttagttgttacgttagtgtttnnnnnnnttatgttttcgacatcgagtct |
574 |
Q |
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| T |
13514965 |
ttagttgttacgttagtgtttaaaaaaattatgttttcgacatcgagtct |
13515014 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 296 - 479
Target Start/End: Original strand, 13484059 - 13484242
Alignment:
| Q |
296 |
catgggtgtgttcaattttgaggatgaaaccacctctaatgtagctcctgctacactttacaaagctctagttacagattctgataaccttatcccaaag |
395 |
Q |
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||||||||| ||||| ||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13484059 |
catgggtgtcttcaactttgaggatgaaaccacatctattgtagctcctgctagactttacaaagctctagttacagattctgataaccttatcccaaag |
13484158 |
T |
|
| Q |
396 |
gttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaacttacttttgttgaaggt |
479 |
Q |
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| T |
13484159 |
gttattgatgccatccaaagtattgaaattgttgaaggaaacggtggcgccggaaccatcaaaaaacttactttcgttgaaggt |
13484242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 297 - 493
Target Start/End: Original strand, 13508485 - 13508681
Alignment:
| Q |
297 |
atgggtgtgttcaattttgaggatgaaaccacctctaatgtagctcctgctacactttacaaagctctagttacagattctgataaccttatcccaaagg |
396 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| ||| |||| | ||||| |||||||| |
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| T |
13508485 |
atgggtgttttcaattttgaggatgaaaccacctctattgtagctcctgctacactttacaaagctcttgttacggatgctgacacccttaccccaaagg |
13508584 |
T |
|
| Q |
397 |
ttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaacttacttttgttgaaggtcggtataaatatat |
493 |
Q |
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| T |
13508585 |
ttattgatgccatcaagagtattgatatcgttgaaggaaacggcggagccggaaccatcaagaaactcacttttgtcgaaggtcggtataaatatat |
13508681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 296 - 479
Target Start/End: Original strand, 13489784 - 13489967
Alignment:
| Q |
296 |
catgggtgtgttcaattttgaggatgaaaccacctctaatgtagctcctgctacactttacaaagctctagttacagattctgataaccttatcccaaag |
395 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||| |||||||||||||| ||||||||||||| |||||||||||||||||||| ||||||| || |
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| T |
13489784 |
catgggtgtcttcaactttgaggatgaaaccacatctattgtagctcctgctagactttacaaagctttagttacagattctgataactttatcccgaat |
13489883 |
T |
|
| Q |
396 |
gttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaacttacttttgttgaaggt |
479 |
Q |
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| T |
13489884 |
gttattgatgccatccaaagtattgaaattgttgaaggaaacggtggcgccggaaccatcaagaaacttactttcgttgaaggt |
13489967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 296 - 495
Target Start/End: Original strand, 13500766 - 13500965
Alignment:
| Q |
296 |
catgggtgtgttcaattttgaggatgaaaccacctctaatgtagctcctgctacactttacaaagctctagttacagattctgataaccttatcccaaag |
395 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||| ||||||||| ||||||||| |||||||| | ||||||||| |||| ||||||||||||||| |
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| T |
13500766 |
catgggtgtcatcaattttgaggaagaaaccacctctgttgtagctccagctacacttcacaaagcttttgttacagatgctgacaaccttatcccaaag |
13500865 |
T |
|
| Q |
396 |
gttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaacttacttttgttgaaggtcggtataaatatattt |
495 |
Q |
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| T |
13500866 |
gttattgatgtcatcaaaagtattgacattgttgaaggaaatggtggcgccggaaccatcaagaaactcactttcgttgaaggtcagtataaatatattt |
13500965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 475
Target Start/End: Complemental strand, 10797690 - 10797511
Alignment:
| Q |
296 |
catgggtgtgttcaattttgaggatgaaaccacctctaatgtagctcctgctacactttacaaagctctagttacagattctgataaccttatcccaaag |
395 |
Q |
| |
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||||||||| |||| |||||| | ||||||||||||| || |||||||||| |||||||||||||| || || |||||| | | |||||||| |
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| T |
10797690 |
catgggtgtattcacatttgagcaagaaaccacctctacagttgctcctgctaagctttacaaagctcttgtccatgactctgatgatatcatcccaaaa |
10797591 |
T |
|
| Q |
396 |
gttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaacttacttttgttga |
475 |
Q |
| |
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| | |||||| ||||||||||||||||| || || || || ||||| ||||| ||||||||||| || ||||| ||||| |
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| T |
10797590 |
gctgttgatgccatcaagagtgttgaaaccgtcgagggaaatggtggtgccggcaccatcaagaagctcactttcgttga |
10797511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 475
Target Start/End: Complemental strand, 50079280 - 50079101
Alignment:
| Q |
296 |
catgggtgtgttcaattttgaggatgaaaccacctctaatgtagctcctgctacactttacaaagctctagttacagattctgataaccttatcccaaag |
395 |
Q |
| |
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||||||||| |||| |||||| | ||||||||||||| || |||||||||| |||||||||||||| || || |||||| | | |||||||| |
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| T |
50079280 |
catgggtgtattcacatttgagcaagaaaccacctctacagttgctcctgctaagctttacaaagctcttgtccatgactctgatgatatcatcccaaaa |
50079181 |
T |
|
| Q |
396 |
gttattgatgtcatcaagagtgttgaaattgttgaaggcaacggtggcgccggaaccatcaagaaacttacttttgttga |
475 |
Q |
| |
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| | |||||| ||||||||||||||||| || || || || ||||| ||||| ||||||||||| || ||||| ||||| |
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| T |
50079180 |
gctgttgatgccatcaagagtgttgaaaccgtcgagggaaatggtggtgccggcaccatcaagaagctcactttcgttga |
50079101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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