View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15274_low_11 (Length: 241)
Name: NF15274_low_11
Description: NF15274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15274_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 27394952 - 27395042
Alignment:
| Q |
40 |
tcacatccacgacggcgattaacaagcctcctatccttcatgtctattcaagaaagagatgcagaacaaacgtggcggcggcggatgaatt |
130 |
Q |
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| T |
27394952 |
tcacatccacgacggcgattaacaagcctcctatccttcgtgtctattcaagaaagagacgcagaacaaacgtggcggtggcggatgaatt |
27395042 |
T |
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Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 119
Target Start/End: Original strand, 498638 - 498709
Alignment:
| Q |
48 |
acgacggcgattaacaagcctcctatccttcatgtctattcaagaaagagatgcagaacaaacgtggcggcg |
119 |
Q |
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| T |
498638 |
acgacgacgattaacaagcctcatatcctttattactattctagaaagagacagagaacaaacgcggcggcg |
498709 |
T |
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