View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15274_low_14 (Length: 217)

Name: NF15274_low_14
Description: NF15274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15274_low_14
NF15274_low_14
[»] chr3 (7 HSPs)
chr3 (18-197)||(21584596-21584775)
chr3 (23-197)||(24497263-24497437)
chr3 (20-197)||(24923461-24923638)
chr3 (18-197)||(24982050-24982229)
chr3 (23-197)||(25085042-25085216)
chr3 (18-197)||(31825556-31825735)
chr3 (18-197)||(24919885-24920064)
[»] chr7 (4 HSPs)
chr7 (18-195)||(10575393-10575570)
chr7 (55-197)||(354408-354551)
chr7 (55-196)||(10580792-10580928)
chr7 (35-197)||(39954861-39955023)
[»] chr8 (1 HSPs)
chr8 (35-195)||(14261048-14261208)
[»] chr2 (2 HSPs)
chr2 (20-144)||(41027629-41027753)
chr2 (23-84)||(30012130-30012191)
[»] chr4 (3 HSPs)
chr4 (20-183)||(22898571-22898734)
chr4 (20-183)||(22950239-22950402)
chr4 (26-197)||(53328718-53328889)
[»] chr5 (1 HSPs)
chr5 (23-183)||(26358552-26358712)


Alignment Details
Target: chr3 (Bit Score: 168; Significance: 3e-90; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 21584596 - 21584775
Alignment:
Q  18 cgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21584596 cgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctcagtgtacgtaaccgcatc 21584695  T
Q  118 acgaatcacattctccaagaaaatcttaagaacacctcttgtttcctcatagatcaaaccactgattctcttaacaccac 197  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||    
T  21584696 acgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattctcttaacaccac 21584775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 24497263 - 24497437
Alignment:
Q  23 ccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaa 122  Q
    ||||| || ||||||||||| |||||||||||||| ||||||||||| || ||||||||||||||||| || ||||||||||| ||||| |||||||| |    
T  24497263 ccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacgga 24497362  T
Q  123 tcacattctccaagaaaatcttaagaacacctcttgtttcctcatagatcaaaccactgattctcttaacaccac 197  Q
    ||||||| |||||||| ||||| |  |||||||| ||||| ||||||||||| ||||||||||||||||||||||    
T  24497363 tcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattctcttaacaccac 24497437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 197
Target Start/End: Original strand, 24923461 - 24923638
Alignment:
Q  20 aatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcac 119  Q
    |||||||| || |||||||| || |||||||||||||| ||||||||||| || ||||| ||||||||||| || ||||||||||| || || |||||||    
T  24923461 aatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtatgtcacagcatcac 24923560  T
Q  120 gaatcacattctccaagaaaatcttaagaacacctcttgtttcctcatagatcaaaccactgattctcttaacaccac 197  Q
    |||| |||||||||||||| ||||| |  |||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  24923561 gaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattctcttaacaccac 24923638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 18 - 197
Target Start/End: Complemental strand, 24982229 - 24982050
Alignment:
Q  18 cgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatc 117  Q
    |||| ||||| || ||||||||||| |||||||||||||| ||||||||||| || || |||||||||||||| || ||||||||||| ||||| |||||    
T  24982229 cgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtatgtaactgcatc 24982130  T
Q  118 acgaatcacattctccaagaaaatcttaagaacacctcttgtttcctcatagatcaaaccactgattctcttaacaccac 197  Q
    ||| || |||||||||||||| ||||| |  |||||||| ||||| ||||| ||||||||||||||||||||||||||||    
T  24982129 acggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttaacaccac 24982050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 23 - 197
Target Start/End: Complemental strand, 25085216 - 25085042
Alignment:
Q  23 ccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaa 122  Q
    ||||| || |||||||| || |||||||||||||| ||||||||||| || ||||||||||||||||| || ||||||||||| ||||| |||||||| |    
T  25085216 ccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgtaactgcatcacgga 25085117  T
Q  123 tcacattctccaagaaaatcttaagaacacctcttgtttcctcatagatcaaaccactgattctcttaacaccac 197  Q
    |||||||||||||||| ||||| |  |||||||| ||||| ||||| |||||||||||||||||||| |||||||    
T  25085116 tcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattctcttcacaccac 25085042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 31825556 - 31825735
Alignment:
Q  18 cgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatc 117  Q
    |||||||||| || |||||||| ||||||||||||||||| ||||||||||| || || || ||||||||||| || ||||||||||| || ||||||||    
T  31825556 cgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtgaccgcatc 31825655  T
Q  118 acgaatcacattctccaagaaaatcttaagaacacctcttgtttcctcatagatcaaaccactgattctcttaacaccac 197  Q
    ||| || |||||||||||||| ||||| |  |||||||| ||||| |||||||||||||||||||| ||||| |||||||    
T  31825656 acggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgatcctcttcacaccac 31825735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 24919885 - 24920064
Alignment:
Q  18 cgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatc 117  Q
    |||||||||| || |||||||| ||||||||||||||||| || |||||||| || ||||| ||||||||||| || ||||||||||| || || |||||    
T  24919885 cgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtcacagcatc 24919984  T
Q  118 acgaatcacattctccaagaaaatcttaagaacacctcttgtttcctcatagatcaaaccactgattctcttaacaccac 197  Q
    |||||| |||||||| ||||| ||||| |  |||||||| ||||| |||||||||||||| ||||||||||| |||||||    
T  24919985 acgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattctcttcacaccac 24920064  T

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Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 10575570 - 10575393
Alignment:
Q  18 cgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatc 117  Q
    |||| ||||| || ||||||||||| ||||| |  || |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  10575570 cgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagtaacagcatc 10575471  T
Q  118 acgaatcacattctccaagaaaatcttaagaacacctcttgtttcctcatagatcaaaccactgattctcttaacacc 195  Q
     |  || |||||||||||||| ||||| |  |||||||||||||||||||||||||| ||||||||||| || |||||    
T  10575470 tcttataacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattcttttcacacc 10575393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 55 - 197
Target Start/End: Complemental strand, 354551 - 354408
Alignment:
Q  55 ataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacct 154  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||||||| |||| |||||| |||||||||||| |  || |||    
T  354551 ataaacaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcct 354452  T
Q  155 cttgtttcctcataga-tcaaaccactgattctcttaacaccac 197  Q
    ||| |||||||||||| | ||||||||||| ||||| |||||||    
T  354451 cttatttcctcatagattaaaaccactgatcctcttcacaccac 354408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 55 - 196
Target Start/End: Complemental strand, 10580928 - 10580792
Alignment:
Q  55 ataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaacacct 154  Q
    ||||||||||||||||||||||| ||||||||||     |||||||||||| ||||| |||||| |||||  ||||| |||||||||||| |  |  |||    
T  10580928 ataaacaacatccatagcagtcagagtcttcctc-----atgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcct 10580834  T
Q  155 cttgtttcctcatagatcaaaccactgattctcttaacacca 196  Q
    ||| ||||||||||||||||||||||||| ||||| ||||||    
T  10580833 cttatttcctcatagatcaaaccactgatcctcttcacacca 10580792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 35 - 197
Target Start/End: Original strand, 39954861 - 39955023
Alignment:
Q  35 cttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctcca 134  Q
    ||||| |||||||| | |||||| ||||||||||| || || ||||| |||||||| |||||||||||||| ||||| ||||||||||||||||||| ||    
T  39954861 cttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaacagcatcacgaatcacattct-ca 39954959  T
Q  135 agaaa-atcttaagaacacctcttgtttcctcatagatcaaaccactgattctcttaacaccac 197  Q
    ||||| ||||| |||||||| |  || || || ||||| | ||| ||||||||||| |||||||    
T  39954960 agaaagatcttgagaacaccgcgagtctcttcgtagatgagaccgctgattctcttcacaccac 39955023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 35 - 195
Target Start/End: Original strand, 14261048 - 14261208
Alignment:
Q  35 cttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatcacattctcca 134  Q
    |||||||| |||||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||| |||||||| ||||| |  |||||||||||||    
T  14261048 cttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttcagtatacgtaacagcatctcttatcacattctcca 14261147  T
Q  135 agaaaatcttaagaacacctcttgtttcctcatagatcaaaccactgattctcttaacacc 195  Q
    |||||||||| |  ||||| |  ||||| ||||| ||||| || ||||||||||| |||||    
T  14261148 agaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattctcttcacacc 14261208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 41027753 - 41027629
Alignment:
Q  20 aatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcac 119  Q
    ||||||||||| || |||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||| || ||||| ||||| ||||| |||||||    
T  41027753 aatccataaagagtccttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcac 41027654  T
Q  120 gaatcacattctccaagaaaatctt 144  Q
    |||| ||||||||||| || |||||    
T  41027653 gaataacattctccaaaaagatctt 41027629  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 84
Target Start/End: Complemental strand, 30012191 - 30012130
Alignment:
Q  23 ccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtctt 84  Q
    |||||||| || |||||||||||||| |  |||||||| ||||||||||||||||| |||||    
T  30012191 ccataaagggtccttccttgcctcttgagcgcataaaccacatccatagcagtcactgtctt 30012130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 5e-21; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 22898734 - 22898571
Alignment:
Q  20 aatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcac 119  Q
    ||||| ||||| |||||||| || ||||| |  |||||||| |||||||||||||| || |||||||| || || ||||||||||| || || ||||| |    
T  22898734 aatccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctc 22898635  T
Q  120 gaatcacattctccaagaaaatcttaagaacacctcttgtttcctcatagatcaaaccactgat 183  Q
     ||||||||||||||| || ||||| |  || || | ||| |||||||| ||||||||||||||    
T  22898634 taatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22898571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 22950402 - 22950239
Alignment:
Q  20 aatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcac 119  Q
    ||||| ||||| |||||||| || ||||| |  |||||||| |||||||||||||| || |||||||| || || ||||||||||| || || ||||| |    
T  22950402 aatccgtaaagggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctc 22950303  T
Q  120 gaatcacattctccaagaaaatcttaagaacacctcttgtttcctcatagatcaaaccactgat 183  Q
     ||||||||||||||| || ||||| |  || || | ||| |||||||| ||||||||||||||    
T  22950302 taatcacattctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22950239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 26 - 197
Target Start/End: Complemental strand, 53328889 - 53328718
Alignment:
Q  26 taaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaatca 125  Q
    ||||| || ||||| |||||||| | ||| |||||||||||||| ||||| |||||||| |  |  |||||||| ||||| || || |||||||||||||    
T  53328889 taaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgacagcatcacgaatca 53328790  T
Q  126 cattctccaagaaa-atcttaagaacacctcttgtttcctcatagatcaaaccactgattctcttaacaccac 197  Q
    |||||| ||||||| ||||| ||||| || |  ||||| |||||||| || |||||||| | ||| |||||||    
T  53328789 cattct-caagaaagatcttgagaacgccacgagtttcttcatagattaagccactgatacgcttcacaccac 53328718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 23 - 183
Target Start/End: Original strand, 26358552 - 26358712
Alignment:
Q  23 ccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctcctcgcatgctcagtgtacgtaaccgcatcacgaa 122  Q
    |||||||| || |||||||||||||| |  ||||||||||||||||||||||| || || || |  |  ||||| |||||||| || || ||||||||||    
T  26358552 ccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatcacgaa 26358651  T
Q  123 tcacattctccaagaaa-atcttaagaacacctcttgtttcctcatagatcaaaccactgat 183  Q
    | ||||||| ||||||| ||||| |||||||| |  ||||| |||||||||| |||||||||    
T  26358652 taacattct-caagaaatatcttgagaacaccacgagtttcttcatagatcagaccactgat 26358712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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