View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15274_low_2 (Length: 498)
Name: NF15274_low_2
Description: NF15274
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15274_low_2 |
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| [»] scaffold0428 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 20 - 488
Target Start/End: Complemental strand, 8295289 - 8294821
Alignment:
| Q |
20 |
gaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcactcctttcaaaaactcgcctagttgctttagttttcagcatgttttca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8295289 |
gaaactcatagtgaaacactctattccatttctttatgaagaagtaaaatcactcctttcaaaaactcgcctagttgctttagttttcagcatgttttca |
8295190 |
T |
|
| Q |
120 |
accgatgcacatgatgttgctaaacatttcaaccttttatcataccttttcttttcctctggagctgttttattctctttatttctcactattccaaacc |
219 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8295189 |
accgatgcacatgatgttgcgaaacatttcaaccttttatcataccttttcttttcctcaggagctgttttattctctttatttctcactattccaaacc |
8295090 |
T |
|
| Q |
220 |
ttgatgaagctgcatcaactcagttcttagaatcaagttatgaaacagtaaatattcctggtttttctattcctctccatatcaaagagcttcccgaccc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8295089 |
ttgatgaagctgcatcaactcagttcttaggatcaagttatgaaacagtaaatattcctggtttttctattcctctccatatcaaagagcttcccgaccc |
8294990 |
T |
|
| Q |
320 |
gtttatctgtgaaagatcaagtgatgcctacaaatcaattcttgatgtgtgtcaaaaattatcattgtttgatggtgttattatgaatactttcactgat |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8294989 |
gtttatctgtgaaagatcaagtgatgcctacaaatcaattcttgatgtgtgtcaaaaattatcattgtttgatggtgttattatgaatactttcactgat |
8294890 |
T |
|
| Q |
420 |
ttggaaccggaagtcataagggttcttcaagatagagagaaacctagtgtttatccggttggacctatg |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8294889 |
ttggaaccggaagtcataagggttcttcaagatagagagaaacctagtgtttatccggttggacctatg |
8294821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 487
Target Start/End: Original strand, 33256466 - 33256933
Alignment:
| Q |
20 |
gaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcactcctttcaaaaactcgcctagttgctttagttttcagcatgttttca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||| |
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|
| T |
33256466 |
gaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcacttctttcaaaaactaaccttgttgctttagtttgcagcatgttttca |
33256565 |
T |
|
| Q |
120 |
accgatgcacatgatgttgctaaacatttcaaccttttatcataccttttcttttcctctggagctgttttattctctttatttctcactattccaaacc |
219 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||| ||||||||| ||||||||| |
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|
| T |
33256566 |
accgatgcacacgatgtagctaaacatttcaaccttttgtcttaccttttcttttcttcaggagctgttttattctctttctttctcactcttccaaacc |
33256665 |
T |
|
| Q |
220 |
ttgatgaagctgcatcaactcagttcttagaatcaagttatgaaacagtaaatattcctggtttttctattcctctccatatcaaagagcttcccgaccc |
319 |
Q |
| |
|
| ||||| |||||||| ||||||||||||| |||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||| ||||| |
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|
| T |
33256666 |
tcgatgatgctgcatctactcagttcttaggatcaagttatgaaatggtaaatgttcctggtttttctattcctttccatgtcaaagagcttccagaccc |
33256765 |
T |
|
| Q |
320 |
gtttatctgtgaaagatcaagtgatgcctacaaatcaattcttgatgtgtgtcaaaaattatcattgtttgatggtgttattatgaatactttcactgat |
419 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |||||||||| | || |
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|
| T |
33256766 |
gtttaactgtgaaagatcaagtgatacctacaaatcaatccttgatgtgtgtcaaaaatcgtcattgtttgatggtgttataatcaatactttcagtaat |
33256865 |
T |
|
| Q |
420 |
ttggaaccggaagtcataagggttcttcaagatagagagaaacctagtgtttatccggttggacctat |
487 |
Q |
| |
|
||||||| ||||| | ||||||| |||||||| ||||||||||||||||||| ||||||||||||||| |
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|
| T |
33256866 |
ttggaactggaagccgtaagggtacttcaagacagagagaaacctagtgtttttccggttggacctat |
33256933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 20 - 487
Target Start/End: Original strand, 584 - 1051
Alignment:
| Q |
20 |
gaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcactcctttcaaaaactcgcctagttgctttagttttcagcatgttttca |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||| ||||||||||||| |
|
|
| T |
584 |
gaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcacttctttcaaaaactaaccttgttgctttagtttgcagcatgttttca |
683 |
T |
|
| Q |
120 |
accgatgcacatgatgttgctaaacatttcaaccttttatcataccttttcttttcctctggagctgttttattctctttatttctcactattccaaacc |
219 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| || |||||||||||||| || |||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
684 |
accgatgcacacgatgtagctaaacatttcaaccttttgtcttaccttttcttttcttcaggagctgttttattctctttctttctcactcttccaaacc |
783 |
T |
|
| Q |
220 |
ttgatgaagctgcatcaactcagttcttagaatcaagttatgaaacagtaaatattcctggtttttctattcctctccatatcaaagagcttcccgaccc |
319 |
Q |
| |
|
| ||||| |||||||| ||||||||||||| |||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||||| ||||| |
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|
| T |
784 |
tcgatgatgctgcatctactcagttcttaggatcaagttatgaaatggtaaatgttcctggtttttctattcctttccatgtcaaagagcttccagaccc |
883 |
T |
|
| Q |
320 |
gtttatctgtgaaagatcaagtgatgcctacaaatcaattcttgatgtgtgtcaaaaattatcattgtttgatggtgttattatgaatactttcactgat |
419 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||||||| || |||||||||| | || |
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|
| T |
884 |
gtttaactgtgaaagatcaagtgatacctacaaatcaatccttgatgtgtgtcaaaaatcgtcattgtttgatggtgttataatcaatactttcagtaat |
983 |
T |
|
| Q |
420 |
ttggaaccggaagtcataagggttcttcaagatagagagaaacctagtgtttatccggttggacctat |
487 |
Q |
| |
|
||||||| ||||| | ||||||| |||||||| ||||||||||||||||||| ||||||||||||||| |
|
|
| T |
984 |
ttggaactggaagccgtaagggtacttcaagacagagagaaacctagtgtttttccggttggacctat |
1051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 7e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 162 - 321
Target Start/End: Complemental strand, 46720808 - 46720649
Alignment:
| Q |
162 |
taccttttcttttcctctggagctgttttattctctttatttctcactattccaaaccttgatgaagctgcatcaactcagttcttagaatcaagttatg |
261 |
Q |
| |
|
||||||||||| ||||| | |||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||||||||| ||||||| ||||| |
|
|
| T |
46720808 |
taccttttcttgtcctcagtagctgttttattctctttgtttctcactattccaaaccttgatgaagttgcttcaactcagttcttcgaatcaaattatg |
46720709 |
T |
|
| Q |
262 |
aaacagtaaatattcctggtttttctattcctctccatatcaaagagcttcccgacccgt |
321 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| ||||| ||||||| ||| | ||||||| |
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|
| T |
46720708 |
aaacagtaaatgttcctagtttttctattccattccatgtcaaagatctttcagacccgt |
46720649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 365 - 459
Target Start/End: Complemental strand, 46720614 - 46720520
Alignment:
| Q |
365 |
tgtgtgtcaaaaattatcattgtttgatggtgttattatgaatactttcactgatttggaaccggaagtcataagggttcttcaagatagagaga |
459 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||| ||||||| |
|
|
| T |
46720614 |
tgtgtgtccaaaattatcattgtttgatggtgttattatgaatactttcactgatttggaactggaagccataagggtacttagagagagagaga |
46720520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 327 - 484
Target Start/End: Complemental strand, 895033 - 894876
Alignment:
| Q |
327 |
tgtgaaagatcaagtgatgcctacaaatcaattcttgatgtgtgtcaaaaattatcattgtttgatggtgttattatgaatactttcactgatttggaac |
426 |
Q |
| |
|
||||||||||||||| | ||||||||| |||||||||||||||||||||| ||||| ||||||||||||| || || ||||||| ||||||||||| |
|
|
| T |
895033 |
tgtgaaagatcaagtttagagtacaaatcatttcttgatgtgtgtcaaaaattctcattagttgatggtgttatcataaacactttcaatgatttggaac |
894934 |
T |
|
| Q |
427 |
cggaagtcataagggttcttcaagatagagagaaacctagtgtttatccggttggacc |
484 |
Q |
| |
|
| || ||||||||| |||||||||| | |||||||||| || ||||||| || ||||| |
|
|
| T |
894933 |
ctgaggtcataaggcttcttcaagaaaaagagaaaccttgtttttatccagtgggacc |
894876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 895346 - 895178
Alignment:
| Q |
20 |
gaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcactcctttcaaaaactcgcctagttgctttagttttcagcatgttttca |
119 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||| ||||||| ||||||||| |||| |||||| ||| ||| ||||| | ||||| || |||||| |
|
|
| T |
895346 |
gaaactcattgtgaaacattctattccatttcttcaacaagaagttaaatcactcatttccaaaactaaccttgtttctttaatcttcagtatattttca |
895247 |
T |
|
| Q |
120 |
accgatgcacatgatgttgctaaacatttcaaccttttatcataccttttcttttcctctggagctgtt |
188 |
Q |
| |
|
|| |||||| |||| ||||| ||||| || ||| | | || |||||||||| | |||| ||||||||| |
|
|
| T |
895246 |
acagatgcatatgaagttgccaaacaatttaacttgtcttcttaccttttctatgcctcaggagctgtt |
895178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 151
Target Start/End: Original strand, 905297 - 905428
Alignment:
| Q |
20 |
gaaactcatagtgaaacactctattccatttcttcatgaagaagtaaaatcactcctttcaaaaactcgcctagttgctttagttttcagcatgttttca |
119 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| || |||||||||||||||||| |||| |||||| ||| ||| ||||| | || | | || ||| |
|
|
| T |
905297 |
gaaactcattgtgaaacattctattccatttctacaagaagaagtaaaatcactcatttccaaaactaaccttgtttctttaatctttggtctattctca |
905396 |
T |
|
| Q |
120 |
accgatgcacatgatgttgctaaacatttcaa |
151 |
Q |
| |
|
|||||||||||||| ||||||||||| ||||| |
|
|
| T |
905397 |
accgatgcacatgaagttgctaaacaattcaa |
905428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 358 - 484
Target Start/End: Original strand, 905641 - 905767
Alignment:
| Q |
358 |
ttcttgatgtgtgtcaaaaattatcattgtttgatggtgttattatgaatactttcactgatttggaaccggaagtcataagggttcttcaagatagaga |
457 |
Q |
| |
|
||||||| || ||||||||| | |||| |||||||| |||| || | ||||||||||||||||| || || || ||||||||||||||||| | ||| |
|
|
| T |
905641 |
ttcttgaagtttgtcaaaaactcacattagttgatggttttataatcagcactttcactgatttggagccagatgttataagggttcttcaagaaaaaga |
905740 |
T |
|
| Q |
458 |
gaaacctagtgtttatccggttggacc |
484 |
Q |
| |
|
||||||| |||||||||| || ||||| |
|
|
| T |
905741 |
gaaaccttgtgtttatccagtgggacc |
905767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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