View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15275_high_2 (Length: 539)
Name: NF15275_high_2
Description: NF15275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15275_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 11 - 516
Target Start/End: Original strand, 8361552 - 8362054
Alignment:
| Q |
11 |
gagagggcaacgagatcttgcaaggaaagtcctctttgagagaagctttgttgtaattgggagatgttgaaagtgggagctggcaattgtctcgtttcag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8361552 |
gagagggcaacgagatcttgcaaggaaagtcctctttgagagaagctttgttgtaattgggagatgttgaaagtgggagctggcaattgtctcgtttcag |
8361651 |
T |
|
| Q |
111 |
tagcctttgagattataccatcctttcttccttttggtacttcccaatttggccctccggactaattaatgacatatatgacactcaaaaaatgta---t |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| | |
|
|
| T |
8361652 |
tagcctttgagattataccatcctttcttccttttggtacttcccaatttggccctccggactaat----gacat----gacactcaaaaaatgtattgt |
8361743 |
T |
|
| Q |
208 |
taattgttactgcaacgtaacctttaaattatcataaaattcatatcatcatttgtgattgtgacttaccagagtgacagcgtccctagcagcaagagcc |
307 |
Q |
| |
|
|| |||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
8361744 |
tatttgttactgc-----aacctttaaattat--tataattcatatcatcatttgtgattgtgacttaccagagtgacagcgtctctagcagcaagagcc |
8361836 |
T |
|
| Q |
308 |
aagatatcagcacaagacacgacccctggacaaactgcttccaatgctttcttagcattatcaattacataaaatgcatgcaatgatatgtttggaggtc |
407 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8361837 |
aaaatatcagcacaagacacgacccctggacaaactgcttccaatgctttcttagcattatcaattacataaaatgcatgcaatgatatgtttggaggtc |
8361936 |
T |
|
| Q |
408 |
catccttttctgctttattattctttccctttgatttcaacagaacagacccatcacaccccttcatta------------attaataaacgttatcaat |
495 |
Q |
| |
|
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
8361937 |
catccttttctgct---ttattctttccctttgttttcaacagaacagacccatcacaccccttcattaatttatttatttattaataaacgttatcaat |
8362033 |
T |
|
| Q |
496 |
ctatatagtatactataaata |
516 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
8362034 |
ctatatagtatactataaata |
8362054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 344 - 423
Target Start/End: Original strand, 9058591 - 9058670
Alignment:
| Q |
344 |
gcttccaatgctttcttagcattatcaattacataaaatgcatgcaatgatatgtttggaggtccatccttttctgcttt |
423 |
Q |
| |
|
||||| ||||||||||| || | |||||| ||||| |||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
9058591 |
gcttctaatgctttctttgcttcatcaatgacatagaatgcatgcaatgaaatgtttggcggtccatccttttctgcttt |
9058670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 284 - 423
Target Start/End: Complemental strand, 31748206 - 31748067
Alignment:
| Q |
284 |
acagcgtccctagcagcaagagccaagatatcagcacaagacacgacccctggacaaactgcttccaatgctttcttagcattatcaattacataaaatg |
383 |
Q |
| |
|
||||| ||||| || |||| ||| ||||||||||||||||| || || || || ||| | ||||| ||||||||||| ||||||||||| | | | |||| |
|
|
| T |
31748206 |
acagcatcccttgctgcaaaagctaagatatcagcacaagagactacaccagggcaagcagcttctaatgctttctttgcattatcaatgataaagaatg |
31748107 |
T |
|
| Q |
384 |
catgcaatgatatgtttggaggtccatccttttctgcttt |
423 |
Q |
| |
|
||||||| ||| ||||| |||||||| ||||||||||| |
|
|
| T |
31748106 |
catgcaaagatgcatttggtggtccatctttttctgcttt |
31748067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 295 - 330
Target Start/End: Complemental strand, 37111348 - 37111313
Alignment:
| Q |
295 |
agcagcaagagccaagatatcagcacaagacacgac |
330 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| |
|
|
| T |
37111348 |
agcagcaagagccaaaatatcagcacaagacacgac |
37111313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University