View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15275_low_1 (Length: 591)
Name: NF15275_low_1
Description: NF15275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15275_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 241 - 573
Target Start/End: Original strand, 52273637 - 52273969
Alignment:
| Q |
241 |
acactaggttgcttaatttctaattcgactgtattcttatccccggattcttctattgtcttctctggaaccctggcgtcaagttcatcgtccatagatt |
340 |
Q |
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| T |
52273637 |
acactaggttgcttaatttctaattcgactgtattcttatccccggattcttctattgtcttctctggaaccctggcgtcaagttcatcgtccatagatt |
52273736 |
T |
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| Q |
341 |
caaactccaaaaccctcttcgcacccaaatcgttttcctcaactgtgtcagtaacattttcaccacccaagctttcaacttcagggacagatcctctaat |
440 |
Q |
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| T |
52273737 |
caaactccaaaaccctcttcgcacccaaatcgttttcctcaactgtgtcagtaacattttcaccacccaagctttcaacttcagggacagatcctctaat |
52273836 |
T |
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| Q |
441 |
tgacacctccaagccagaattctgttcggatccagagaatttgattggggacgaaaagggaagaggattttctgaaaccctagatgccttcttcaaacgc |
540 |
Q |
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| T |
52273837 |
tgacacctccaagccagaattctgttcggatccagagaatttgattggggacgaaaaggggagaggattttctgaaaccctagatgccttcttcaaacgc |
52273936 |
T |
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| Q |
541 |
ttaagctttcgttcgatgacgggagaagaaggt |
573 |
Q |
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| T |
52273937 |
ttaagctttcgttcgatgacgggagaagaaggt |
52273969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 1 - 167
Target Start/End: Original strand, 52273397 - 52273563
Alignment:
| Q |
1 |
ttttcccttctttcctgttaaatcggtgaatctacaaattaataaaatcaataacaaattgtataaaaagaattcactggaaaacgcagacaaaccttct |
100 |
Q |
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| T |
52273397 |
ttttcccttctttcctgttaaatcggtgaatctacaaattaataaaatcaataacaaattgtataaaaataattcactggaaaacgcatacaaaccttct |
52273496 |
T |
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| Q |
101 |
cggcttttcttttattggagatagattctttaagcttcttctcactgccgttatcgtcgtcactgcc |
167 |
Q |
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| T |
52273497 |
cggcttttcttttattggagatagattctttaagcttcttctcactgccgttatcgtcgtcactgcc |
52273563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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