View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15275_low_11 (Length: 262)
Name: NF15275_low_11
Description: NF15275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15275_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 30400721 - 30400487
Alignment:
| Q |
18 |
atatgaattgtatagagacgagaatgtaacaacagattaccccctcaaaaatttaaaacaaatttccataccaagtagcaaaatttattcacaaacatac |
117 |
Q |
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| T |
30400721 |
atatgaattgtatagagacaagaatgtaacaacagattaccccctcaaaaatttaaaacaaatttccataccaagtagcaaaatttattcacaaacatac |
30400622 |
T |
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| Q |
118 |
agaagattggtcattaattaagaaatgaaaatgtgaataacagtgttatttattaccgttatatgaatgactcttcctctcagttttgacccttgagcta |
217 |
Q |
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| T |
30400621 |
acaagattggtcattaattaagaaatgaaaatgtgaataacagtgttatttattaccgttatatgaatgactcttcctctcagttttgacccttgagcta |
30400522 |
T |
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| Q |
218 |
atgcagccacccatgccagtgtgttattgatgatg |
252 |
Q |
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| T |
30400521 |
atgcagccatccatgccagtgtgttattgatgatg |
30400487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 30388344 - 30388308
Alignment:
| Q |
134 |
attaagaaatgaaaatgtgaataacagtgttatttat |
170 |
Q |
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| T |
30388344 |
attaagaaaggaaaatgtgaataacaatgttatttat |
30388308 |
T |
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