View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15275_low_13 (Length: 252)
Name: NF15275_low_13
Description: NF15275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15275_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 7 - 133
Target Start/End: Complemental strand, 50936429 - 50936303
Alignment:
| Q |
7 |
aagaatatcggactacatactcggaggagctttcaaaacgcttggtttcaaagctgagcggaaagttggaggtaccaaattactactgagtatacactca |
106 |
Q |
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| T |
50936429 |
aagaatatcggactacatactcggaggagctttcaaaaagcttggtttcgaagctgagcggaaagttggaggtaccaaattactactgagtatacactca |
50936330 |
T |
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| Q |
107 |
atgatcatgttattcaaattacatgac |
133 |
Q |
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| T |
50936329 |
atgatcatgttattcaaattacatgac |
50936303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 50936256 - 50936184
Alignment:
| Q |
180 |
tgaaagtcaattctgtagtcatataagtagataactttgtaaagtgtgtgttaaagaagagatcaatcaaaac |
252 |
Q |
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| T |
50936256 |
tgaaagtcaattctgtagtcatataagtagataactttgtaaagtgtgtgttaaagaagagatcaatcaaaac |
50936184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 26558191 - 26558299
Alignment:
| Q |
21 |
acatactcggaggagctttcaaaacgcttggtttcaaagctgagcggaaagttggaggtaccaaattactact--gagtatacactcaatgatcatgtta |
118 |
Q |
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| T |
26558191 |
acatacgcggaggagctttctaaatgcttagtttcagagctaagaggaaagttagaggtactaaattactaatgagagtatacactcaatgatcatgtta |
26558290 |
T |
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| Q |
119 |
ttcaaatta |
127 |
Q |
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| T |
26558291 |
ttcaaatta |
26558299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 26563517 - 26563593
Alignment:
| Q |
7 |
aagaatatcggactacatactcggaggagctttcaaaacgcttggtttcaaagctgagcggaaagttggaggtacca |
83 |
Q |
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| T |
26563517 |
aagaatatcgaacaacatacgcggaggagctttctaaacgcctaatttcagagctgagcggaaagttagaggtacca |
26563593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 26563667 - 26563735
Alignment:
| Q |
180 |
tgaaagtcaattctgtagtcatataagtagataactttgt-aaagtgtgtgttaaagaagagatcaatc |
247 |
Q |
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| T |
26563667 |
tgaaagtcaattttgtagccttataagtatataacttcgtaaaagagtatgttaaggaagagatcaatc |
26563735 |
T |
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