View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15275_low_3 (Length: 457)
Name: NF15275_low_3
Description: NF15275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15275_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 13 - 127
Target Start/End: Complemental strand, 41014374 - 41014260
Alignment:
| Q |
13 |
catcatcaaccgagagaaatattgtagaaaaacacttcattatgnnnnnnnnatcgtgcaaatgtaccattttggttttaatccatgtgaaaaaaacttg |
112 |
Q |
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| T |
41014374 |
catcatcaaccgagagaaatattgtagaaaaacacttcattatgttttttttatcgtgcaaatgtaccattttggttttaatccatgtgaaaaaaacttg |
41014275 |
T |
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| Q |
113 |
tttgttttcaatcct |
127 |
Q |
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| T |
41014274 |
tttgttttcaatcct |
41014260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 41014194 - 41014118
Alignment:
| Q |
183 |
aaaatttgtttatgttgaaattagctctagctcatgtggtgtataatattcaatttaattctcatgcagtttatatt |
259 |
Q |
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| T |
41014194 |
aaaatttgtttatgttgaaattagctctagctcatatagtgtataatattcaatttaattcccatgcagtttatatt |
41014118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 360 - 404
Target Start/End: Complemental strand, 48381285 - 48381241
Alignment:
| Q |
360 |
attagatcaaaaaggaacaccaatcatattatagtctgtccacat |
404 |
Q |
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| T |
48381285 |
attagatcaaagaggaacaccaatcatattatagtctgtccacat |
48381241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 352 - 406
Target Start/End: Complemental strand, 33686456 - 33686403
Alignment:
| Q |
352 |
ttaaaactattagatcaaaaaggaacaccaatcatattatagtctgtccacataa |
406 |
Q |
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| T |
33686456 |
ttaaaactattagat-aaaaaggaacaccaatcatattatagtctgcccacataa |
33686403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 404 - 442
Target Start/End: Complemental strand, 33686287 - 33686249
Alignment:
| Q |
404 |
taagatgtatcattgttgaattaatcctgatgtgtaaat |
442 |
Q |
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| T |
33686287 |
taagatgtatcattgttgaattaatccttatgtgtaaat |
33686249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 397
Target Start/End: Original strand, 4310334 - 4310398
Alignment:
| Q |
333 |
ccatcataggaaagtttctttaaaactattagatcaaaaaggaacaccaatcatattatagtctg |
397 |
Q |
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| T |
4310334 |
ccatcatgggaaagtttttttaaaaccattagatcaaagaggaacacggatcattttatggtctg |
4310398 |
T |
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