View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15275_low_6 (Length: 401)

Name: NF15275_low_6
Description: NF15275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15275_low_6
NF15275_low_6
[»] chr6 (3 HSPs)
chr6 (10-401)||(34924677-34925069)
chr6 (131-401)||(34929166-34929436)
chr6 (368-401)||(34934941-34934974)


Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 10 - 401
Target Start/End: Original strand, 34924677 - 34925069
Alignment:
Q  10 catcatcatttaaggcttctacacttccaagtttaaaacgcaatgtaatgaattccattgaaggtatgccacggagacacaannnnnnnattcagaagct 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  34924677 catcatcatttcaggcttctacacttccaagtttaaaacgcaatgtaatgaattccattgaaggtatgccacggagacacaatttttttattcagaagct 34924776  T
Q  110 taaggagaatatattcattgtcggaacacaaagcttccatgtatgagttt-agacgccctttgcatgcaagatgattaacaaatttccaataattttaca 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34924777 taaggagaatatattcattgtcggaacacaaagcttccatgtatgagttttagacgccctttgcatgcaagatgattaacaaatttccaataattttaca 34924876  T
Q  209 ttacatccaagtgttataatagacggtacatgggtgagggacttactagagtagagccctcaccttagaagccacctaacaattcatctataaattgtgg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34924877 ttacatccaagtgttataatagacggtacatgggtgagggacttactagagtagagccctcaccttagaagccacctaacaattcatctataaattgtgg 34924976  T
Q  309 tcaaaataacaatccagaacccttgctagaggcgattagaatactgatagaatcaggcaccgaacagaaacaaacagattgcacaatacgaat 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34924977 tcaaaataacaatccagaacccttgctagaggcgattagaatactgatagaatcaggcaccgaacagaaacaaacagattgcacaatacgaat 34925069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 131 - 401
Target Start/End: Original strand, 34929166 - 34929436
Alignment:
Q  131 cggaacacaaagcttccatgtatgagtttagacgccctttgcatgcaagatgattaacaaatttccaataattttacattacatccaagtgttataatag 230  Q
    ||||||||||||||||||| ||||||||||||| |||||  ||||||||  |||||||| ||||||||||||||| |||||||||||||||||| |||||    
T  34929166 cggaacacaaagcttccatatatgagtttagacccccttcccatgcaagtcgattaacacatttccaataattttccattacatccaagtgttacaatag 34929265  T
Q  231 acggtacatgggtgagggacttactagagtagagccctcaccttagaagccacctaacaattcatctataaattgtggtcaaaataacaatccagaaccc 330  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  34929266 acggtacatgggggagggacttactagagtagatccctcaccttagaagccagctaacaattcatctataaattgtggtcaagataataatccagaaccc 34929365  T
Q  331 ttgctagaggcgattagaatactgatagaatcaggcaccgaacagaaacaaacagattgcacaatacgaat 401  Q
    |||| ||| | |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34929366 ttgcaagatgtgattagaatactgatagaatcaggcatcgaacagaaacaaacagattgcacaatacgaat 34929436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 368 - 401
Target Start/End: Original strand, 34934941 - 34934974
Alignment:
Q  368 ccgaacagaaacaaacagattgcacaatacgaat 401  Q
    ||||||||||||||||||||||||||||||||||    
T  34934941 ccgaacagaaacaaacagattgcacaatacgaat 34934974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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