View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15275_low_7 (Length: 399)
Name: NF15275_low_7
Description: NF15275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15275_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 247 - 356
Target Start/End: Complemental strand, 35898462 - 35898353
Alignment:
| Q |
247 |
ccattttccacattatctttttaccatgattgttaattatttttcctgcttcctcttttgactatcttacttataaggatctcactcaattcctatttga |
346 |
Q |
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| T |
35898462 |
ccattttccacattatctttttaccatgattgttaattatttttcctgcttcctcttttgactattttacttataaggatctcactcaattcctatttga |
35898363 |
T |
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| Q |
347 |
tggaacgaaa |
356 |
Q |
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| T |
35898362 |
tggaaagaaa |
35898353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 186 - 245
Target Start/End: Complemental strand, 35898551 - 35898492
Alignment:
| Q |
186 |
ataaacgtgtggaatggtaaaaagtgcattttgaaaatcttgcaatttcatttgttgctt |
245 |
Q |
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| T |
35898551 |
ataaacgtgtggaatggtaaaaagtgcattttgaaaatcttgcagtttcatttgttgctt |
35898492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 35898600 - 35898551
Alignment:
| Q |
15 |
tctcaacaagagttatacaaacacatatatataaagtatggtgttcaaga |
64 |
Q |
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| T |
35898600 |
tctcaacaagagttatacaaacacatatatataaagtatggtgttcaaga |
35898551 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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