View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15275_low_8 (Length: 375)
Name: NF15275_low_8
Description: NF15275
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15275_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 97 - 357
Target Start/End: Complemental strand, 2178735 - 2178485
Alignment:
| Q |
97 |
ttagtgatatgttatgcattctgtgcagctgtgcaataatatatgaatatctagtcgtcttgggtgcactttcaatctatcattgcataccttctaatct |
196 |
Q |
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| T |
2178735 |
ttagtgatatgttatgcattctgtgcagctgtgcaataatatatgaatatctagtcgtcttgggtgcactttcaatctatcattgcataccttctaatct |
2178636 |
T |
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| Q |
197 |
tcaagaatttcaagaagatacatttcttaaataattactacatggtttatttacttgttatttacttgcgatcaaatacatatctaattatgtccgacac |
296 |
Q |
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| T |
2178635 |
tctagaatttcaagaagatacatttcttaaataattactacatggtttat-------ttatttacttgcgatcaaatacatatcta---atgtccgacac |
2178546 |
T |
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| Q |
297 |
taacacgacatgacacatgagtttatattcgattaatagacgtgtgcatgatagttgtgtg |
357 |
Q |
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| T |
2178545 |
taacacgacatgacacatgagtttatattcgattaatagacgtgtgcatgatagttgtgtg |
2178485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 2179624 - 2179538
Alignment:
| Q |
13 |
atactttcacaacaagaacaaaaaggagacaagtgaatgtgttttgtctttttgtggctatcaagttgtacttcgattccatttttag |
100 |
Q |
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| T |
2179624 |
atactttcacaacaagaacaaaaaggagacaagtgaatgtg-tttgtctttttgtggctatcaagttgtacttcgattctatttttag |
2179538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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