View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15276_high_1 (Length: 488)

Name: NF15276_high_1
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15276_high_1
NF15276_high_1
[»] chr1 (2 HSPs)
chr1 (141-319)||(48651395-48651575)
chr1 (333-421)||(35389724-35389812)
[»] chr7 (5 HSPs)
chr7 (333-425)||(15579554-15579646)
chr7 (333-421)||(1273179-1273267)
chr7 (421-477)||(34422225-34422281)
chr7 (333-385)||(34422142-34422194)
chr7 (425-478)||(15579678-15579732)
[»] chr2 (4 HSPs)
chr2 (333-421)||(6943752-6943840)
chr2 (333-421)||(32455794-32455882)
chr2 (425-478)||(6943876-6943930)
chr2 (358-386)||(6755711-6755739)
[»] scaffold0007 (1 HSPs)
scaffold0007 (333-415)||(242929-243015)
[»] chr5 (1 HSPs)
chr5 (344-421)||(33374109-33374186)
[»] chr4 (3 HSPs)
chr4 (333-391)||(38261886-38261944)
chr4 (361-421)||(51600359-51600419)
chr4 (358-387)||(1808816-1808845)
[»] chr3 (1 HSPs)
chr3 (336-421)||(13882078-13882163)
[»] chr8 (1 HSPs)
chr8 (358-390)||(41011029-41011061)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 7e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 141 - 319
Target Start/End: Complemental strand, 48651575 - 48651395
Alignment:
Q  141 aacatatctgtgtcatctatgatttaacgataaaacaacgcctatttattttg--ttttttcctgttactaattttcgatagaagattattgattggtaa 238  Q
    ||||||||| || ||||||||||||||| ||| | |||| || ||||||||||  ||||||||||| ||  ||| ||||||||||||| ||| |||||||    
T  48651575 aacatatctatgccatctatgatttaacaatacaccaacaccaatttattttgatttttttcctgtcacagattatcgatagaagattgttggttggtaa 48651476  T
Q  239 tccaaaatttgcaagttccttatttatcttatctaatgataagataaaatctcattctagaacttaataacaaaaatgata 319  Q
    | ||| || ||||||||||||| |||||||||| ||||||||||| ||||| ||||| |||||||||||||||||||||||    
T  48651475 ttcaagatctgcaagttccttaattatcttatccaatgataagatgaaatcccattcaagaacttaataacaaaaatgata 48651395  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 333 - 421
Target Start/End: Complemental strand, 35389812 - 35389724
Alignment:
Q  333 taactggacggggttaggagcgctttgtcacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagcttta 421  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||| | ||||| |||  ||| |||||||||||||||||||| ||||    
T  35389812 taactggacggggctaggagcactttgtcacttggttgattttgtccatatttcggatactcagttacaacttaaggatgttagtttta 35389724  T

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Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 333 - 425
Target Start/End: Original strand, 15579554 - 15579646
Alignment:
Q  333 taactggacggggttaggagcgctttgtcacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagctttaatgg 425  Q
    ||||| || |||| |||||| |||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||    
T  15579554 taactagaaggggctaggagagctttgtcacttggttgattttgtcaacattttagatactcaattacaacttaaggatgttagctttaatgg 15579646  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 1273179 - 1273267
Alignment:
Q  333 taactggacggggttaggagcgctttgtcacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagcttta 421  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||||||||||  |||  |||||||||||||| ||||||||| ||||    
T  1273179 taactagacggggctaggagcgctttgtcacttggttgattttgtcaacattttggatactcaattacaacttacggatgttagtttta 1273267  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 421 - 477
Target Start/End: Original strand, 34422225 - 34422281
Alignment:
Q  421 aatggttccaaacgagctcagcaggactgttgatcagttccccctcctctggccttt 477  Q
    ||||||||||||||||||||||| |||| ||||||| | ||||||||| ||||||||    
T  34422225 aatggttccaaacgagctcagcacgactattgatcaatcccccctcctttggccttt 34422281  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 333 - 385
Target Start/End: Original strand, 34422142 - 34422194
Alignment:
Q  333 taactggacggggttaggagcgctttgtcacttggttgattttgtcaacattt 385  Q
    ||||||||| ||| ||||||| |||||| |||||||||||||||| |||||||    
T  34422142 taactggaccgggctaggagcactttgttacttggttgattttgttaacattt 34422194  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 15579678 - 15579732
Alignment:
Q  425 gttccaaacgagctcagcaggactgttgatcagttcc-ccctcctctggcctttg 478  Q
    |||||||||||||| | || |||||||||||||||||  ||||||||||||||||    
T  15579678 gttccaaacgagctaatcacgactgttgatcagttccttcctcctctggcctttg 15579732  T

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Target: chr2 (Bit Score: 61; Significance: 5e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 333 - 421
Target Start/End: Original strand, 6943752 - 6943840
Alignment:
Q  333 taactggacggggttaggagcgctttgtcacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagcttta 421  Q
    ||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||| ||||    
T  6943752 taactagatggggctaggagcgctttgtcacttggttgattttgtcaacatttcagatactcatttacaacttaaggatgttagtttta 6943840  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 333 - 421
Target Start/End: Complemental strand, 32455882 - 32455794
Alignment:
Q  333 taactggacggggttaggagcgctttgtcacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagcttta 421  Q
    |||||||| |||| ||||| | ||||||| |||||||||||||||||||||||| |||  |||| | ||||||||| ||||||| ||||    
T  32455882 taactggatggggctaggaacactttgtcccttggttgattttgtcaacatttcggatactcaacttcaacttaagaatgttagtttta 32455794  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 425 - 478
Target Start/End: Original strand, 6943876 - 6943930
Alignment:
Q  425 gttccaaacgagctcagcaggactgttgatcagtt-ccccctcctctggcctttg 478  Q
    ||||||||||| ||||||| |||| |||||||||| ||||||||| |||||||||    
T  6943876 gttccaaacgaactcagcacgactattgatcagttcccccctcctttggcctttg 6943930  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 358 - 386
Target Start/End: Original strand, 6755711 - 6755739
Alignment:
Q  358 tgtcacttggttgattttgtcaacatttc 386  Q
    |||||||||||||||||||||||||||||    
T  6755711 tgtcacttggttgattttgtcaacatttc 6755739  T

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Target: scaffold0007 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 415
Target Start/End: Original strand, 242929 - 243015
Alignment:
Q  333 taactggacggggttaggagcgctttgtcact----tggttgattttgtcaacatttcagatgttcaattacaacttaaggatgtta 415  Q
    |||||||| |||| |||||||||||||| |||    ||||||||||||||||||||||||||  ||||||||| |||||| ||||||    
T  242929 taactggatggggctaggagcgctttgttactagcttggttgattttgtcaacatttcagatactcaattacagcttaagaatgtta 243015  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 344 - 421
Target Start/End: Complemental strand, 33374186 - 33374109
Alignment:
Q  344 ggttaggagcgctttgtcacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagcttta 421  Q
    |||||| |||| ||||||||||||||||||| ||||| ||||||||| ||||||||||  ||||| ||||||| ||||    
T  33374186 ggttagaagcgttttgtcacttggttgatttcgtcaatatttcagatattcaattacagtttaagaatgttagtttta 33374109  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 333 - 391
Target Start/End: Complemental strand, 38261944 - 38261886
Alignment:
Q  333 taactggacggggttaggagcgctttgtcacttggttgattttgtcaacatttcagatg 391  Q
    ||||| ||||||| ||||||||||||||||| |||||||||| ||||||||||| ||||    
T  38261944 taactagacggggctaggagcgctttgtcacatggttgatttagtcaacatttcggatg 38261886  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 361 - 421
Target Start/End: Complemental strand, 51600419 - 51600359
Alignment:
Q  361 cacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagcttta 421  Q
    ||||| ||||||||||||||||||||| ||  ||||||| || ||||||||||||||||||    
T  51600419 cacttcgttgattttgtcaacatttcaaatactcaattaaaaattaaggatgttagcttta 51600359  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 358 - 387
Target Start/End: Complemental strand, 1808845 - 1808816
Alignment:
Q  358 tgtcacttggttgattttgtcaacatttca 387  Q
    ||||||||||||||||||||||||||||||    
T  1808845 tgtcacttggttgattttgtcaacatttca 1808816  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 336 - 421
Target Start/End: Complemental strand, 13882163 - 13882078
Alignment:
Q  336 ctggacggggttaggagcgctttgtcacttggttgattttgtcaacatttcagatgttcaattacaacttaaggatgttagcttta 421  Q
    ||||| |||||||||| |||||||| ||||| |||||||||||||| |||| |||    ||||| | |||||||||||||| ||||    
T  13882163 ctggatggggttaggatcgctttgttacttgattgattttgtcaacttttcggatacataattatagcttaaggatgttagtttta 13882078  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 390
Target Start/End: Original strand, 41011029 - 41011061
Alignment:
Q  358 tgtcacttggttgattttgtcaacatttcagat 390  Q
    |||||||||||||||||||||||||||||||||    
T  41011029 tgtcacttggttgattttgtcaacatttcagat 41011061  T

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