View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15276_high_11 (Length: 331)

Name: NF15276_high_11
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15276_high_11
NF15276_high_11
[»] chr6 (6 HSPs)
chr6 (14-325)||(34635948-34636259)
chr6 (254-331)||(23260750-23260827)
chr6 (254-325)||(25005145-25005216)
chr6 (254-325)||(32450441-32450511)
chr6 (254-325)||(26182629-26182700)
chr6 (254-322)||(11166593-11166661)
[»] chr5 (4 HSPs)
chr5 (14-325)||(536491-536802)
chr5 (95-190)||(42860997-42861095)
chr5 (16-93)||(42860846-42860923)
chr5 (254-304)||(27026622-27026672)
[»] chr7 (8 HSPs)
chr7 (15-325)||(15874115-15874425)
chr7 (156-244)||(45232879-45232968)
chr7 (254-325)||(22077634-22077705)
chr7 (254-325)||(48576333-48576404)
chr7 (269-325)||(21491676-21491732)
chr7 (254-325)||(18367504-18367575)
chr7 (254-304)||(12196765-12196815)
chr7 (254-294)||(9993292-9993332)
[»] chr1 (6 HSPs)
chr1 (95-294)||(6835794-6835993)
chr1 (16-96)||(6835643-6835723)
chr1 (254-325)||(35762230-35762301)
chr1 (260-325)||(37667328-37667393)
chr1 (255-325)||(9537532-9537602)
chr1 (254-294)||(21264799-21264839)
[»] chr3 (4 HSPs)
chr3 (254-325)||(5004898-5004969)
chr3 (254-325)||(46404740-46404812)
chr3 (254-325)||(16475279-16475350)
chr3 (254-325)||(16975254-16975326)
[»] chr2 (2 HSPs)
chr2 (254-325)||(32735470-32735541)
chr2 (254-310)||(12774999-12775055)
[»] scaffold0413 (1 HSPs)
scaffold0413 (254-325)||(8841-8912)
[»] scaffold0120 (1 HSPs)
scaffold0120 (254-325)||(2648-2719)
[»] chr4 (1 HSPs)
chr4 (254-325)||(28969359-28969430)


Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 34635948 - 34636259
Alignment:
Q  14 taaaaaaccttttcacgccaagcatcaacatcacccaccttcctgttcttggaaccacctcatctttgtacatagtctttcagagctggtcttgtctcaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34635948 taaaaaaccttttcacgccaagcatcaacatcacccaccttcttgttcttggaaccacctcatctttgtacatagtctttcagagctggtcttgtctcaa 34636047  T
Q  114 agtactattaccaggtttcattccaagtctcccactctagttcaactcgttttattggtgagtttggggtcaagaaacttgctcgtgctttcggttcaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34636048 agtactattaccaggtttcattccaagtctcccactctagtccaactcgttttattggtgagtttggggtcaagaaacttgctcgtgctttcggttcaat 34636147  T
Q  214 acaaccttaggaatgtcttgtgaggaagaaaggtgtctcgggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaag 313  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||    
T  34636148 acaaccttaggaatgtcttgtgaggaagaaaagtgtctcgggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagag 34636247  T
Q  314 gtagagattctt 325  Q
    ||||||||||||    
T  34636248 gtagagattctt 34636259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 254 - 331
Target Start/End: Complemental strand, 23260827 - 23260750
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattcttctctct 331  Q
    ||||||||||||| |||||||||||||||||||||  |||||||||||||||||||| |||||||||||||| |||||    
T  23260827 ggtaagggctttttccccatacgttcttactaagtattaggattatgttatgaattagaggtagagattcttgtctct 23260750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 25005145 - 25005216
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    |||||| | |||| ||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  25005145 ggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattctt 25005216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 32450511 - 32450441
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    ||||||||||||| |||| |||||||||||||||| |||||||| |||||||||||| ||||||||||||||    
T  32450511 ggtaagggctttt-ccccgtacgttcttactaagtactaggattgtgttatgaattagaggtagagattctt 32450441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 26182700 - 26182629
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    ||||||||||||| ||||||| || | ||||||||  |||||| ||||||||||||| || |||||||||||    
T  26182700 ggtaagggctttttccccatatgtccatactaagtattaggatgatgttatgaattagagttagagattctt 26182629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 322
Target Start/End: Complemental strand, 11166661 - 11166593
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagatt 322  Q
    ||||||||||||| |||||||||||||||||||||  ||||||  | ||||||| ||  ||||||||||    
T  11166661 ggtaagggctttttccccatacgttcttactaagtgttaggatcttattatgaaatagtggtagagatt 11166593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 536491 - 536802
Alignment:
Q  14 taaaaaaccttttcacgccaagcatcaacatcacccaccttcctgttcttggaaccacctcatctttgtacatagtctttcagagctggtcttgtctcaa 113  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536491 taaaaaaccttttcacgccaagcatcaacatcacccaccttcttgttcttggaaccacctcatctttgtacatagtctttcagagctggtcttgtctcaa 536590  T
Q  114 agtactattaccaggtttcattccaagtctcccactctagttcaactcgttttattggtgagtttggggtcaagaaacttgctcgtgctttcggttcaat 213  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  536591 agtactattaccaggtttcattccaagtctcccactctagtccaactcgttttattggtgagtttggggtcaagaaacttgctcgtgctttcggttcaat 536690  T
Q  214 acaaccttaggaatgtcttgtgaggaagaaaggtgtctcgggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaag 313  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||    
T  536691 acaaccttaggaatgtcttgtgaggaagaaaagtgtctcgggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagag 536790  T
Q  314 gtagagattctt 325  Q
    ||||||||||||    
T  536791 gtagagattctt 536802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 190
Target Start/End: Original strand, 42860997 - 42861095
Alignment:
Q  95 agagctggtcttgtctcaaagtactattaccaggtttcattccaagtctccca--ctctagttcaactcgttttattggtgag-tttggggtcaagaaa 190  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||  |||| || |||||||||||||||||||| || ||||||||||||    
T  42860997 agagctggccttgtctcaaagtactattaccaggtttcattctaagtctcccactctcttgtccaactcgttttattggtgagattgggggtcaagaaa 42861095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 93
Target Start/End: Original strand, 42860846 - 42860923
Alignment:
Q  16 aaaaaccttttcacgccaagcatcaacatcacccaccttcctgttcttggaaccacctcatctttgtacatagtcttt 93  Q
    ||||||||||||||||||||||||||||||||||||| || ||||| | ||||||||||||| |||||||||||||||    
T  42860846 aaaaaccttttcacgccaagcatcaacatcacccaccatcttgttcattgaaccacctcatccttgtacatagtcttt 42860923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 304
Target Start/End: Original strand, 27026622 - 27026672
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttat 304  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||| ||||||    
T  27026622 ggtaagggctttttccccatacgtttttactaagtgctaggattgtgttat 27026672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 15 - 325
Target Start/End: Complemental strand, 15874425 - 15874115
Alignment:
Q  15 aaaaaaccttttcacgccaagcatcaacatcacccaccttcctgttcttggaaccacctcatctttgtacatagtctttcagagctggtcttgtctcaaa 114  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  15874425 aaaaaaccttttcacgccaagcatcaacatcacccaccttcttgttcttggaaccacctcatctttgtacatagtctttcagagttggtcttgtctcaaa 15874326  T
Q  115 gtactattaccaggtttcattccaagtctcccactctagttcaactcgttttattggtgagtttggggtcaagaaacttgctcgtgctttcggttcaata 214  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15874325 gtactattaccaggtttcattccaagtctcccactctagtccaactcgttttattggtgagtttggggtcaagaaacttgctcgtgctttcggttcaata 15874226  T
Q  215 caaccttaggaatgtcttgtgaggaagaaaggtgtctcgggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaagg 314  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||    
T  15874225 caaccttaggaatgtcttgtgaggaagaaaagtgtctcgggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagagg 15874126  T
Q  315 tagagattctt 325  Q
    |||||||||||    
T  15874125 tagagattctt 15874115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 156 - 244
Target Start/End: Original strand, 45232879 - 45232968
Alignment:
Q  156 caactcgttttattggtgagtttggggtcaagaaacttgctcgtgctttcggttca-atacaaccttaggaatgtcttgtgaggaagaaa 244  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||||||||| || | |||| ||||||||||||||||||||||||||    
T  45232879 caacttgttttattggtgagattggggtctagaaacttgctcgtgctttcggtgcagacacaatcttaggaatgtcttgtgaggaagaaa 45232968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 22077634 - 22077705
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    |||||||||||||  |||||| |||| |||||||| ||||||| ||||||||||||| ||||||||||||||    
T  22077634 ggtaagggcttttttcccatatgttcatactaagtactaggatgatgttatgaattagaggtagagattctt 22077705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 48576333 - 48576404
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    ||||||||||||| |||||||||| | |||||||| || |||| ||||||||||||| ||||||||||||||    
T  48576333 ggtaagggctttttccccatacgtccatactaagtactgggataatgttatgaattagaggtagagattctt 48576404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 269 - 325
Target Start/End: Complemental strand, 21491732 - 21491676
Alignment:
Q  269 cccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    ||||||||| | |||||||| ||||||| ||||||||||||| ||||||||||||||    
T  21491732 cccatacgtccatactaagtactaggatgatgttatgaattagaggtagagattctt 21491676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 18367575 - 18367504
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    ||||||||||||| ||| |||||| | || ||||  ||||||  ||||||||||||||||||||||||||||    
T  18367575 ggtaagggctttttccctatacgtccataataagaactaggacgatgttatgaattaaaggtagagattctt 18367504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 12196815 - 12196765
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttat 304  Q
    ||||||||||||| |||||||| |||||||||||| | |||| ||||||||    
T  12196815 ggtaagggctttttccccatacattcttactaagtgcaaggactatgttat 12196765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 294
Target Start/End: Original strand, 9993292 - 9993332
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctagg 294  Q
    ||||||||||||| ||||| ||||||||||||||| |||||    
T  9993292 ggtaagggctttttccccacacgttcttactaagtgctagg 9993332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 172; Significance: 2e-92; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 95 - 294
Target Start/End: Original strand, 6835794 - 6835993
Alignment:
Q  95 agagctggtcttgtctcaaagtactattaccaggtttcattccaagtctcccactctagttcaactcgttttattggtgagtttggggtcaagaaacttg 194  Q
    |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  6835794 agagctggccttgtctcaaagtactattaccaggtttcattctaagtctcccactctagtccaactcgttttattggtgagattggggtcaagaaacttg 6835893  T
Q  195 ctcgtgctttcggttcaatacaaccttaggaatgtcttgtgaggaagaaaggtgtctcgggtaagggcttttaccccatacgttcttactaagttctagg 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  6835894 ctcgtgctttcggttcaatacaaccttaggaatgtcttgtgaggaagaaaagtgtctcgggtaagggctttttccccatacgttcttactaagtgctagg 6835993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 6835643 - 6835723
Alignment:
Q  16 aaaaaccttttcacgccaagcatcaacatcacccaccttcctgttcttggaaccacctcatctttgtacatagtctttcag 96  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  6835643 aaaaaccttttcacgccaagcatcaacatcacccaccttcttgttcatggaaccacctcatctttgtacatagtctttcag 6835723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 35762301 - 35762230
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    ||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||    
T  35762301 ggtaagggctttttccccatacgtccatactaagtactaggattatgttatgaattagaggtagagattctt 35762230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 260 - 325
Target Start/End: Complemental strand, 37667393 - 37667328
Alignment:
Q  260 ggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    ||||||| |||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||    
T  37667393 ggctttttccccatacgttcttactaagtaataggattatgttatgaattagaggtagagattctt 37667328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 255 - 325
Target Start/End: Complemental strand, 9537602 - 9537532
Alignment:
Q  255 gtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    ||||||||||||||| ||||||| | |||| ||| ||||||| ||||||||||||| ||||| ||||||||    
T  9537602 gtaagggcttttacctcatacgtccatactgagtactaggatgatgttatgaattagaggtatagattctt 9537532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 294
Target Start/End: Complemental strand, 21264839 - 21264799
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctagg 294  Q
    ||||||||||||| ||||||||||||||||||||| |||||    
T  21264839 ggtaagggctttttccccatacgttcttactaagtgctagg 21264799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 5004969 - 5004898
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  5004969 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattctt 5004898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 46404812 - 46404740
Alignment:
Q  254 ggtaagggctttta-ccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    |||||||||||||  ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  46404812 ggtaagggcttttttccccatacgttcttactaagtactaggattatgttatgaattagaggtagagattctt 46404740  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 16475279 - 16475350
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    |||||| | |||| ||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||    
T  16475279 ggtaagagttttttccccatacgttcttactaagtactaagattatgttatgaattagaggtagagattctt 16475350  T

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Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 16975254 - 16975326
Alignment:
Q  254 ggtaagggcttttacccc-atacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    ||||||||||||| |||| |||| |||||| ||||| ||||||||||||||||||||| ||||||||||||||    
T  16975254 ggtaagggcttttccccccatacattcttaataagtactaggattatgttatgaattagaggtagagattctt 16975326  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 32735541 - 32735470
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||    
T  32735541 ggtaagggctttttccccatacgttcttactaagtgctaggattatgttatgaattagaggtagagattctt 32735470  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 12775055 - 12774999
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaatta 310  Q
    ||||||||||||| |||||||||| | ||| |||| ||||||| ||||| |||||||    
T  12775055 ggtaagggctttttccccatacgtccatacaaagtactaggatgatgttgtgaatta 12774999  T

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Target: scaffold0413 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 254 - 325
Target Start/End: Original strand, 8841 - 8912
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||| | ||||||    
T  8841 ggtaagggctttttccccatacgttcttactaagtactaggattatgttatgaattagaggtataaattctt 8912  T

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Target: scaffold0120 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 2719 - 2648
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    ||||||||||||| ||||||||||||||||||||| |||||| | |||||| || ||  |||||| ||||||    
T  2719 ggtaagggctttttccccatacgttcttactaagtgctaggactttgttataaaatagtggtagaaattctt 2648  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 254 - 325
Target Start/End: Complemental strand, 28969430 - 28969359
Alignment:
Q  254 ggtaagggcttttaccccatacgttcttactaagttctaggattatgttatgaattaaaggtagagattctt 325  Q
    |||||||| |||| || ||||||| | |||||||| ||||||| ||||||||||||| ||||||| ||||||    
T  28969430 ggtaagggttttttcctcatacgtccatactaagtactaggatgatgttatgaattagaggtagaaattctt 28969359  T

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