View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15276_high_12 (Length: 324)

Name: NF15276_high_12
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15276_high_12
NF15276_high_12
[»] chr8 (3 HSPs)
chr8 (15-315)||(5403263-5403568)
chr8 (188-238)||(39605536-39605586)
chr8 (181-236)||(35704272-35704327)
[»] scaffold0054 (2 HSPs)
scaffold0054 (185-238)||(35149-35202)
scaffold0054 (111-157)||(35162-35207)
[»] chr5 (1 HSPs)
chr5 (181-238)||(19534302-19534359)
[»] chr1 (2 HSPs)
chr1 (181-238)||(22024051-22024108)
chr1 (187-238)||(27293508-27293559)


Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 15 - 315
Target Start/End: Original strand, 5403263 - 5403568
Alignment:
Q  15 acgtaactactctattattattagttttggcttttcctaaattattcctctaaaagtagtcatattttagatggattggat-------gtgtacctatcc 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||       |||||| |||||    
T  5403263 acgtaactactctattattattagttttggtttttcctaaattattcttccaaaagtagtcatattttagatggattggatactaaatgtgtacatatcc 5403362  T
Q  108 taagtaggggtgtacaaaaatgtgattaacttgaattgtatccataaactatttaatatggtgtaannnnnnngtggttcagtttgattcaatttatgga 207  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||       |||||||| ||||||||||||||||||    
T  5403363 taagtaggggtgtgcaaaaatgtgattaact-gaattgtatccataaactatttaatatggtgcaatttttttgtggttcaatttgattcaatttatgga 5403461  T
Q  208 tacaattcagtcaaccacatttttacacacctctgcttatttttaccggtttaacgaaatattttttcacagccaaattagagtgtaataaaatgtagta 307  Q
    |||||||||||||||||||||||| ||| | |  | | ||||||||| ||| ||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  5403462 tacaattcagtcaaccacatttttgcac-cttaggataatttttacccgttcaacaaaatattttttcacagccaaattagagagtaataaaatgtagta 5403560  T
Q  308 taatttac 315  Q
    ||||||||    
T  5403561 taatttac 5403568  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 39605586 - 39605536
Alignment:
Q  188 agtttgattcaatttatggatacaattcagtcaaccacatttttacacacc 238  Q
    ||||||||||||||||||||||||||||||| ||||| |||||| ||||||    
T  39605586 agtttgattcaatttatggatacaattcagttaaccatatttttgcacacc 39605536  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 181 - 236
Target Start/End: Complemental strand, 35704327 - 35704272
Alignment:
Q  181 gtggttcagtttgattcaatttatggatacaattcagtcaaccacatttttacaca 236  Q
    ||||| || ||||||||| ||||| ||||||||||||| |||||||||||| ||||    
T  35704327 gtggtccaatttgattcagtttatagatacaattcagttaaccacatttttgcaca 35704272  T

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Target: scaffold0054 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 238
Target Start/End: Original strand, 35149 - 35202
Alignment:
Q  185 ttcagtttgattcaatttatggatacaattcagtcaaccacatttttacacacc 238  Q
    ||||||||| |||| ||||||||||||||||||| |||||||||||| ||||||    
T  35149 ttcagtttggttcagtttatggatacaattcagttaaccacatttttgcacacc 35202  T

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Target: scaffold0054; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 157
Target Start/End: Complemental strand, 35207 - 35162
Alignment:
Q  111 gtaggggtgtacaaaaatgtgattaacttgaattgtatccataaact 157  Q
    |||||||||| |||||||||| |||||| ||||||||||||||||||    
T  35207 gtaggggtgtgcaaaaatgtggttaact-gaattgtatccataaact 35162  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 19534359 - 19534302
Alignment:
Q  181 gtggttcagtttgattcaatttatggatacaattcagtcaaccacatttttacacacc 238  Q
    ||||| ||||||| ||||  |||||||||||||||||| |||||||||||| ||||||    
T  19534359 gtggtccagtttggttcagcttatggatacaattcagttaaccacatttttgcacacc 19534302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 22024108 - 22024051
Alignment:
Q  181 gtggttcagtttgattcaatttatggatacaattcagtcaaccacatttttacacacc 238  Q
    ||||||||||||| |||| |||||| |||||||| ||| |||||||||||| ||||||    
T  22024108 gtggttcagtttggttcagtttatgaatacaattgagttaaccacatttttgcacacc 22024051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 238
Target Start/End: Complemental strand, 27293559 - 27293508
Alignment:
Q  187 cagtttgattcaatttatggatacaattcagtcaaccacatttttacacacc 238  Q
    |||||||||||| | ||||||| ||||||||| ||||| |||||||||||||    
T  27293559 cagtttgattcagtgtatggatgcaattcagttaaccatatttttacacacc 27293508  T

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