View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15276_high_13 (Length: 314)
Name: NF15276_high_13
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15276_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 10239099 - 10238972
Alignment:
| Q |
1 |
cgcccaaagaaatattcgagatagtaggagtcagccatataggtagttgtgagtagaaaaattcgttgtccggggagtgaattttatttaaatatcttta |
100 |
Q |
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| T |
10239099 |
cgcccaaagaaatattcgagatagtaggagtcagccatataggtagttgtgagtagaaaattttgttgtcgggggagtgaattttatttaaatattttta |
10239000 |
T |
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| Q |
101 |
ccttgataagtcaaaatcatgttcaatt |
128 |
Q |
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| T |
10238999 |
ccttgataagtcaaaatcatgttcaatt |
10238972 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 9e-30; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 192 - 286
Target Start/End: Complemental strand, 38698806 - 38698712
Alignment:
| Q |
192 |
ctagaattttgcatctaaagtctcaatgttgttcaggaaagttctcccagaagtgaaggaaactatggctggtttatgttatattggatcaaggt |
286 |
Q |
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| T |
38698806 |
ctagaatttggtatctaaagtctcaatgttgttcaggaaagttctcccagaagtgaaggaacctatagctagtttatgttatgttgaatcaaggt |
38698712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 196 - 301
Target Start/End: Complemental strand, 38700748 - 38700643
Alignment:
| Q |
196 |
aattttgcatctaaagtctcaatgttgttcaggaaagttctcccagaagtgaaggaaactatggctggtttatgttatattggatcaaggtgtagtgaac |
295 |
Q |
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| T |
38700748 |
aattttgtatctaaagtctcaatgttgttcagggaagttcccccagaagtgaacgacgatatcgctagcttatgttacattggttcatggtataatgaac |
38700649 |
T |
|
| Q |
296 |
atccag |
301 |
Q |
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||||| |
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| T |
38700648 |
ttccag |
38700643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 129
Target Start/End: Original strand, 36276817 - 36276864
Alignment:
| Q |
82 |
ttttatttaaatatctttaccttgataagtcaaaatcatgttcaatta |
129 |
Q |
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| T |
36276817 |
ttttatttaaatatctttaccttgataactcaaaattatgttcaatta |
36276864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 147
Target Start/End: Complemental strand, 38699019 - 38698916
Alignment:
| Q |
44 |
tagttgtgagtagaaaaattcgttgtccggggagtgaattttatttaaatatctttaccttgataagtcaaaatcatgttcaattaaatattttacactt |
143 |
Q |
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|||||||||||||||||||| |||| ||| | ||||| |||||||||||||| ||| |||||||||| | |||||| ||||||| |||||||||| |
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| T |
38699019 |
tagttgtgagtagaaaaattaattgttggggaacaaaatttaatttaaatatctttgcctcgataagtcaacaccatgttaaattaaactttttacactt |
38698920 |
T |
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| Q |
144 |
gttt |
147 |
Q |
| |
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|||| |
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|
| T |
38698919 |
gttt |
38698916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 309
Target Start/End: Original strand, 36276881 - 36276972
Alignment:
| Q |
211 |
gtctcaatgttgttcaggaaagttctcccagaagtgaaggaaactatggctggtttatgttatattggatcaaggtgtagtgaacatccagaattgaag |
309 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||| ||| || | |||||||||||||||||||||| || ||||||||||||| |
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| T |
36276881 |
gtctcaatgtttttcaggaaagttctcccagaagtgaaagaatatatagc-------ttttatattggatcaaggtgtagtcaagttccagaattgaag |
36276972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 302
Target Start/End: Original strand, 39447083 - 39447190
Alignment:
| Q |
195 |
gaattttgcatctaaagtctcaatgttgttcaggaaagttctcccagaagtgaaggaaactatggctggtttatgttatattggatcaaggtgtagtgaa |
294 |
Q |
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|||||||| |||| |||| ||||||||||| ||| || | |||| ||| |||||||| |||| ||| ||||||| ||||||||| ||| || ||||||| |
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| T |
39447083 |
gaattttgtatctgaagtttcaatgttgtttagggaattcatccccgaaatgaaggaagctattgctagtttatgctatattggagcaaagtttagtgaa |
39447182 |
T |
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| Q |
295 |
catccaga |
302 |
Q |
| |
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| |||||| |
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| T |
39447183 |
cttccaga |
39447190 |
T |
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