View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15276_high_5 (Length: 430)
Name: NF15276_high_5
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15276_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 19 - 424
Target Start/End: Complemental strand, 12920099 - 12919689
Alignment:
| Q |
19 |
tggagtcctgtaaaaaacctgccgcaagatgcaccggtgagtgagcttatagacagggaaacaaaaacctggagtaggaccaaagttttcaacaccttca |
118 |
Q |
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||||||||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12920099 |
tggagtcctgtaaaaaacctgccccatgatacaccggtgagtgagcttatagacagggaaacaaaaacctggagtaggaccaaagttttcaacaccttca |
12920000 |
T |
|
| Q |
119 |
actcgtatgaagcccatcaaattattaacattccaatctcgtggaggctaccagaggataaaaggattttgcattgggaaagaaatggtaattactctgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12919999 |
actcgtatgaagcccatcaaattattaacattccaatctcgtggagactactagaggataaaaggattttgcattgggaaagaaatggtaattactctgt |
12919900 |
T |
|
| Q |
219 |
gcgttcggcttaccattcgatacaagatgacaacagtagagagaaccctgaagcttcttctatgattgaccaaaggctttggagagcagtctggaaaatg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| |||||||||| |
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| T |
12919899 |
gcgttcggcttaccattcgatacaagatgacaacagtagagagaaccctgaagcttcatctttgagtgaccaaaggctttggagagcagactggaaaatg |
12919800 |
T |
|
| Q |
319 |
catgctccaaac-----tgtactagaaactttttgtggcgactggcccgcgacattctgccaaccagagggcgactggaacaaaaaggcgtgaatcttga |
413 |
Q |
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|||||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
12919799 |
catgctccaaacaggctaggactagaaactttttgtggcgactggcccgcaacattctgccaaccagaggccgactggaacaaaaaggcgtgattcttga |
12919700 |
T |
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| Q |
414 |
tcctgtatgcc |
424 |
Q |
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||||||||||| |
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| T |
12919699 |
tcctgtatgcc |
12919689 |
T |
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