View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15276_high_7 (Length: 404)
Name: NF15276_high_7
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15276_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Original strand, 46955584 - 46955972
Alignment:
| Q |
1 |
ctcggtgcataaattttcataatgtctttttacgaagaatttgcataatgcttgacattcgcggggacttgaatttgcaggaataaggatagagttgtca |
100 |
Q |
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| T |
46955584 |
ctcggtgcataaattttcataatgtctttttacgaagaatttgcataatgcttgacatccgcggggacttgaatttgcaggaataaggatagggttgtta |
46955683 |
T |
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| Q |
101 |
tgaataatcaaagtggctatttgatgcgtacgaaaatatcatcatctgatgaaggtggggttgcagctggttttgcagtaatagatagtgtatacctcac |
200 |
Q |
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| T |
46955684 |
tgaataatcaaagtggctatttgatgcgtacgaaaatatcatcatctgatgaaggtggggttgcagctggttttgcagtaatagatagtgtatacctcac |
46955783 |
T |
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| Q |
201 |
ttgacgtagagcacctctaacttatctgggtatattatcaacagattgtgtttacacattaccatttgagcctcctgtttatatttgtctgcctccggaa |
300 |
Q |
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| T |
46955784 |
ttgacgtagagcacctctaacttatctgggtatattatcaacacattgtgtttacacattaccatttgagcctcctgtttatatttgtctgcctccgcaa |
46955883 |
T |
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| Q |
301 |
aaaattgaaagggaggccacattgcttattttacgttatcccatggtgtgttgtatagttgcacaaaaataacctgttaaagctttttg |
389 |
Q |
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| T |
46955884 |
aaaattgaaagggaggccacattgcttattttacgttatcccatagtgtgttgtatagttgcacaaaaataacctgttaaagctttttg |
46955972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 46948628 - 46948755
Alignment:
| Q |
73 |
atttgcaggaataaggatagagttgtcatgaataatcaaagtggctatttgatgcgtacgaaaatatcatcatctgatgaaggtggggttgcagctggtt |
172 |
Q |
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| T |
46948628 |
atttgcaggaataaggataaggttattgtgaataatgaaagtggctatatggtacgtacaaaaccatcattatctgatgaaggtggggttttgcctggtt |
46948727 |
T |
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| Q |
173 |
ttgcagtaatagatagtgtatacctcac |
200 |
Q |
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| T |
46948728 |
ttggagtaatagatagtgtatacctcac |
46948755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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