View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15276_low_1 (Length: 945)

Name: NF15276_low_1
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15276_low_1
NF15276_low_1
[»] chr5 (8 HSPs)
chr5 (54-274)||(40684499-40684736)
chr5 (587-760)||(40684732-40684905)
chr5 (761-931)||(21249362-21249532)
chr5 (186-340)||(40679516-40679670)
chr5 (827-877)||(21249511-21249561)
chr5 (156-220)||(40675657-40675722)
chr5 (845-891)||(21249579-21249625)
chr5 (763-808)||(21249633-21249678)
[»] chr1 (16 HSPs)
chr1 (759-931)||(10824546-10824718)
chr1 (760-931)||(22683140-22683311)
chr1 (763-891)||(37189565-37189693)
chr1 (778-931)||(18844476-18844629)
chr1 (759-892)||(19056367-19056500)
chr1 (759-879)||(18844677-18844798)
chr1 (761-886)||(37189368-37189492)
chr1 (762-892)||(15825737-15825865)
chr1 (761-892)||(19056150-19056281)
chr1 (776-889)||(10824383-10824496)
chr1 (804-892)||(22683357-22683445)
chr1 (827-879)||(22683290-22683342)
chr1 (827-880)||(10824514-10824567)
chr1 (827-868)||(19056307-19056348)
chr1 (827-877)||(18844608-18844658)
chr1 (827-872)||(37189496-37189541)
[»] chr2 (21 HSPs)
chr2 (761-931)||(16973064-16973234)
chr2 (760-929)||(2916377-2916545)
chr2 (763-931)||(44594415-44594583)
chr2 (779-931)||(38982734-38982886)
chr2 (759-879)||(44594246-44594367)
chr2 (760-891)||(40987656-40987787)
chr2 (760-892)||(16973280-16973412)
chr2 (759-872)||(11533680-11533794)
chr2 (786-931)||(24125836-24125975)
chr2 (752-891)||(13559519-13559657)
chr2 (761-892)||(38982557-38982688)
chr2 (764-892)||(2916593-2916721)
chr2 (767-920)||(40987834-40987987)
chr2 (786-891)||(24126146-24126245)
chr2 (761-828)||(24125670-24125737)
chr2 (827-880)||(16973213-16973266)
chr2 (827-880)||(44594383-44594436)
chr2 (814-891)||(13559357-13559434)
chr2 (827-880)||(38982702-38982755)
chr2 (827-872)||(2916526-2916571)
chr2 (827-872)||(24125812-24125857)
[»] chr8 (17 HSPs)
chr8 (760-892)||(13884488-13884620)
chr8 (759-931)||(42126380-42126553)
chr8 (761-890)||(13884706-13884835)
chr8 (760-931)||(29714541-29714712)
chr8 (779-892)||(2554066-2554179)
chr8 (761-891)||(42126601-42126731)
chr8 (759-892)||(11867898-11868030)
chr8 (761-872)||(29714778-29714889)
chr8 (760-858)||(43416262-43416360)
chr8 (810-889)||(14996678-14996758)
chr8 (830-880)||(2554002-2554052)
chr8 (827-872)||(14996608-14996653)
chr8 (800-892)||(15862540-15862632)
chr8 (827-880)||(29714691-29714744)
chr8 (779-887)||(26745959-26746067)
chr8 (779-887)||(26745281-26745389)
chr8 (827-872)||(42126532-42126577)
[»] scaffold0060 (1 HSPs)
scaffold0060 (760-892)||(22921-23053)
[»] chr7 (17 HSPs)
chr7 (759-891)||(28715640-28715772)
chr7 (759-872)||(30862216-30862329)
chr7 (759-892)||(28715858-28715991)
chr7 (760-892)||(41985909-41986041)
chr7 (752-892)||(6474271-6474412)
chr7 (759-931)||(6474458-6474629)
chr7 (778-891)||(47373679-47373792)
chr7 (764-892)||(30862436-30862564)
chr7 (761-931)||(47373462-47373633)
chr7 (760-833)||(41986183-41986256)
chr7 (779-887)||(38408121-38408229)
chr7 (779-887)||(6271188-6271296)
chr7 (827-877)||(41986058-41986108)
chr7 (779-868)||(6270237-6270326)
chr7 (827-872)||(47373612-47373657)
chr7 (759-815)||(22226665-22226721)
chr7 (779-887)||(38407450-38407558)
[»] chr3 (13 HSPs)
chr3 (760-892)||(51663466-51663598)
chr3 (763-931)||(46003425-46003593)
chr3 (760-891)||(40244624-40244756)
chr3 (761-931)||(51663250-51663420)
chr3 (760-891)||(20537925-20538056)
chr3 (762-892)||(20538150-20538280)
chr3 (754-892)||(46003241-46003379)
chr3 (764-872)||(40364194-40364301)
chr3 (760-892)||(40364040-40364172)
chr3 (760-823)||(40244873-40244936)
chr3 (827-880)||(46003393-46003446)
chr3 (827-872)||(20538076-20538121)
chr3 (827-872)||(51663399-51663444)
[»] scaffold0781 (1 HSPs)
scaffold0781 (761-872)||(5271-5382)
[»] chr6 (15 HSPs)
chr6 (761-872)||(2216814-2216925)
chr6 (760-892)||(24798624-24798756)
chr6 (759-887)||(24798843-24798971)
chr6 (766-931)||(11643754-11643919)
chr6 (761-930)||(18494911-18495079)
chr6 (759-855)||(24690353-24690449)
chr6 (759-872)||(11643985-11644097)
chr6 (759-891)||(18494732-18494862)
chr6 (763-847)||(24690607-24690691)
chr6 (827-872)||(11643898-11643943)
chr6 (779-868)||(9954825-9954914)
chr6 (779-887)||(9955590-9955698)
chr6 (826-878)||(24798770-24798822)
chr6 (827-880)||(18494878-18494931)
chr6 (827-880)||(24690504-24690557)
[»] chr4 (13 HSPs)
chr4 (759-892)||(39161286-39161419)
chr4 (748-892)||(39161503-39161647)
chr4 (753-892)||(55173469-55173608)
chr4 (760-872)||(50509364-50509476)
chr4 (759-892)||(47097016-47097146)
chr4 (761-880)||(55173334-55173454)
chr4 (759-891)||(47096798-47096928)
chr4 (764-872)||(37996068-37996176)
chr4 (761-808)||(2623451-2623498)
chr4 (779-862)||(9738136-9738219)
chr4 (827-880)||(47096947-47097001)
chr4 (827-879)||(39161436-39161488)
chr4 (779-853)||(9738937-9739011)
[»] scaffold0034 (1 HSPs)
scaffold0034 (813-877)||(108047-108111)
[»] scaffold0036 (1 HSPs)
scaffold0036 (778-887)||(61042-61151)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 2e-92; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 2e-92
Query Start/End: Original strand, 54 - 274
Target Start/End: Original strand, 40684499 - 40684736
Alignment:
Q  54 gcagaatgctgtcattatacgatcgaaaaagccacagttagagacc----------------atgcactgtttgaagatggaaacaacttcggctttgga 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||                ||||| ||||||||||||||||||||||||||||||||    
T  40684499 gcagaatgctgtcattatacgatcgaaaaagccacagttagagaccttaaaatgtattatagatgcattgtttgaagatggaaacaacttcggctttgga 40684598  T
Q  138 atttgtattcggaacagccagggagttatggtccaa-cacggactgggtggtttataggaacaccttcgccaagcgaagctgaaacaagaggtaccttat 236  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40684599 atttgtattcggaacagccagggagttatggtccaagcacggactgggtggtttataggaacaccttcgccaagcgaagctgaaacaagaggtaccttat 40684698  T
Q  237 aaacaagagttgtcgaagaagaattacattccgtgtta 274  Q
    ||||||||||||||||||||||||||||||||||||||    
T  40684699 aaacaagagttgtcgaagaagaattacattccgtgtta 40684736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 162; E-Value: 6e-86
Query Start/End: Original strand, 587 - 760
Target Start/End: Original strand, 40684732 - 40684905
Alignment:
Q  587 tgttattccacaatagaaatatcgtcatccatttgaaacttattcttccaaatttgtctgtatattctagtaactgttcaatcagtggcacgagataagg 686  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||    
T  40684732 tgttattgcacaatagaaatatcgtcatccatttgaaacttattcttccaaatttgtttgtatattttagtaactgttcaatcagtggcacgagataagg 40684831  T
Q  687 ccacaccacgccataaattacactgaaaaattaccatgaggaagtataaaagtgattttttattataaaaagta 760  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40684832 ccacaccacgccataaattacactgaaaaattaccatgaggaagtataaaagtgattttttattataaaaagta 40684905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 761 - 931
Target Start/End: Original strand, 21249362 - 21249532
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 860  Q
    |||||||||||||| | ||||||||| | ||||| ||||||||||||| ||||||||| ||||| |||||||||||| ||||||||||||||||||||||    
T  21249362 ggcttattcaatcacctggtcccttaccgtaattgattgtctcaatttggtcccctaattataaattgtaccaatttagtcccctatgttttgcttcgtt 21249461  T
Q  861 actagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
    |||||||||| | ||||||| |||||||||||       |||||||||||||| |||||||||||| ||||    
T  21249462 actagttttaatcctttctgttagtttctctcaaaaaaatgttaacttatgtaccaatttggtcccttatg 21249532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 186 - 340
Target Start/End: Original strand, 40679516 - 40679670
Alignment:
Q  186 ggtttataggaacaccttcgccaagcgaagctgaaacaagaggtaccttataaacaagagttgtcgaagaagaattacattccgtgttagccaagatatc 285  Q
    ||||||||||||||||||||||||| |||||||||  ||||||||  ||||||||||||||| ||  |||| || | |||  | ||||| ||||||||||    
T  40679516 ggtttataggaacaccttcgccaagtgaagctgaagaaagaggtagattataaacaagagttttcatagaaaaagtgcatctcatgttatccaagatatc 40679615  T
Q  286 aacacattcatttgcttctcaatacacatgagatatctcaacattctacaataac 340  Q
    |||||||| |||||||||||||||||| |||||||| ||||||| |||| |||||    
T  40679616 aacacatttatttgcttctcaatacacttgagatatttcaacatgctactataac 40679670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 827 - 877
Target Start/End: Original strand, 21249511 - 21249561
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 877  Q
    ||||||||||||||||| |||||||||||  ||||||||||||||| ||||    
T  21249511 tgtaccaatttggtcccttatgttttgctctgttactagttttagtccttt 21249561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 220
Target Start/End: Original strand, 40675657 - 40675722
Alignment:
Q  156 cagggagttatggtccaa-cacggactgggtggtttataggaacaccttcgccaagcgaagctgaa 220  Q
    |||||||||||||||||| |||||| |  ||||||| ||||||||||||||||| | |||||||||    
T  40675657 cagggagttatggtccaagcacggaatatgtggtttgtaggaacaccttcgccatgtgaagctgaa 40675722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 845 - 891
Target Start/End: Complemental strand, 21249625 - 21249579
Alignment:
Q  845 tatgttttgcttcgttactagttttagttctttctggtagtttctct 891  Q
    ||||||||||| ||||| |||||||||| ||||||| ||||||||||    
T  21249625 tatgttttgctccgttattagttttagtcctttctgttagtttctct 21249579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 763 - 808
Target Start/End: Complemental strand, 21249678 - 21249633
Alignment:
Q  763 cttattcaatcatccggtcccttaacttaattaattgtctcaattt 808  Q
    ||||||||||||||  |||||||||||||||| ||||||| |||||    
T  21249678 cttattcaatcatcttgtcccttaacttaattgattgtcttaattt 21249633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 7e-61; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 759 - 931
Target Start/End: Complemental strand, 10824718 - 10824546
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 858  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10824718 taggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcg 10824619  T
Q  859 ttactagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
    |||||||||||||| |||||| ||||||||||||        ||||||||||||| ||||||| |||||||||    
T  10824618 ttactagttttagtcctttctagtagtttctctcaaaaaaacgttaacttatgtaccaatttgatcccctatg 10824546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 760 - 931
Target Start/End: Original strand, 22683140 - 22683311
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 859  Q
    ||||||||||||||| ||| ||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  22683140 aggcttattcaatcacccgctcctttaacttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgctttgt 22683239  T
Q  860 tactagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
    ||||||||||||| ||||||| |||||||||||        ||||||||||||| |||||||||||||||||    
T  22683240 tactagttttagtcctttctgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccctatg 22683311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 763 - 891
Target Start/End: Complemental strand, 37189693 - 37189565
Alignment:
Q  763 cttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 862  Q
    |||||||||||| | ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37189693 cttattcaatcacctggtcccttaacttaattgattgtctcaatttggtcccctatctataatttgtaccaatttggtcccctatgttttgcttcgttac 37189594  T
Q  863 tagttttagttctttctggtagtttctct 891  Q
    ||||||||||  |||||||||||||||||    
T  37189593 tagttttagtcatttctggtagtttctct 37189565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 778 - 931
Target Start/End: Original strand, 18844476 - 18844629
Alignment:
Q  778 ggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 877  Q
    ||||||||||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||    
T  18844476 ggtcccttaacttaattgattatctcaatttggtcccctaactataatttgtatcaatttggtcccctatgttttgcttcgttactagttttagtcattt 18844575  T
Q  878 ctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
    |||||||||||||||        || |||||||||| |||||| ||||||||||    
T  18844576 ctggtagtttctctcaaaaaaacgtaaacttatgtaccaatttagtcccctatg 18844629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 759 - 892
Target Start/End: Complemental strand, 19056500 - 19056367
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 858  Q
    |||||||||||||||||||||||||||||||||||| ||||| | ||||| |||||||||||||||| ||||||||||||||  |||||||||||||| |    
T  19056500 taggcttattcaatcatccggtcccttaacttaattgattgttttaatttggtcccctaactataatctgtaccaatttggtatcctatgttttgctttg 19056401  T
Q  859 ttactagttttagttctttctggtagtttctctc 892  Q
    ||||||||||||||  ||||||  ||||||||||    
T  19056400 ttactagttttagtcatttctgtcagtttctctc 19056367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 759 - 879
Target Start/End: Complemental strand, 18844798 - 18844677
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtc-ccctaactataatttgtaccaatttggtcccctatgttttgcttc 857  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||||||||| ||  |||||||||||||||||| ||||||||||| |||||||||||| |    
T  18844798 taggcttattcaatcacccgatcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctcc 18844699  T
Q  858 gttactagttttagttctttct 879  Q
    ||||||||||||||||||||||    
T  18844698 gttactagttttagttctttct 18844677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 761 - 886
Target Start/End: Original strand, 37189368 - 37189492
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 860  Q
    |||||||||||||| ||||||| ||||||||||| ||||||||||||| ||| | ||||||||||||||||||||||||||| |||||||||||| ||||    
T  37189368 ggcttattcaatcacccggtcc-ttaacttaattgattgtctcaatttggtctcataactataatttgtaccaatttggtcctctatgttttgctccgtt 37189466  T
Q  861 actagttttagttctttctggtagtt 886  Q
    |||||||||||| ||||||| |||||    
T  37189467 actagttttagtcctttctgttagtt 37189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 762 - 892
Target Start/End: Complemental strand, 15825865 - 15825737
Alignment:
Q  762 gcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 861  Q
    ||||||||||||| |||||| |||||||||||| ||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  15825865 gcttattcaatcacccggtctcttaacttaattgattgtctcaatttggtcc--taactataatttgtaccaatttggtcccctatgttttgctttgtta 15825768  T
Q  862 ctagttttagttctttctggtagtttctctc 892  Q
     |||||||||| |||| |  |||||||||||    
T  15825767 ttagttttagtcctttttattagtttctctc 15825737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 761 - 892
Target Start/End: Original strand, 19056150 - 19056281
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 860  Q
    |||||||||||||| | | ||||||||||||||| ||||| | ||||| ||||||||| ||||||||||| |||||||||||||||| |||||||| |||    
T  19056150 ggcttattcaatcacctgatcccttaacttaattgattgtattaatttggtcccctaattataatttgtatcaatttggtcccctatattttgctttgtt 19056249  T
Q  861 actagttttagttctttctggtagtttctctc 892  Q
    ||||||||||||  |||||| |||||||||||    
T  19056250 actagttttagtcttttctgttagtttctctc 19056281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 776 - 889
Target Start/End: Original strand, 10824383 - 10824496
Alignment:
Q  776 ccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttct 875  Q
    ||||||| ||||||||||| ||| |  |||||| ||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||    
T  10824383 ccggtcctttaacttaattgattattgcaatttggtcccctaattataatttgtatcaatttggtcctctatgttttgctccgttactagttttagtcct 10824482  T
Q  876 ttctggtagtttct 889  Q
    ||||| ||||||||    
T  10824483 ttctgttagtttct 10824496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 804 - 892
Target Start/End: Complemental strand, 22683445 - 22683357
Alignment:
Q  804 aatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagtttctctc 892  Q
    ||||| ||||||||||| | ||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||  |||||||||||    
T  22683445 aatttggtcccctaacttttatttgtaccaatttggtcctctatgttttgctccgttactagttttagtcctttctcttagtttctctc 22683357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 827 - 879
Target Start/End: Original strand, 22683290 - 22683342
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttct 879  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  22683290 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttct 22683342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 827 - 880
Target Start/End: Complemental strand, 10824567 - 10824514
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 880  Q
    |||||||||||| |||||||||||||||| |||| ||||||||||| |||||||    
T  10824567 tgtaccaatttgatcccctatgttttgctccgttcctagttttagtcctttctg 10824514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 827 - 868
Target Start/End: Complemental strand, 19056348 - 19056307
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttt 868  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  19056348 tgtaccaatttggtcccctgtgttttgcttcgttactagttt 19056307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 827 - 877
Target Start/End: Original strand, 18844608 - 18844658
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 877  Q
    ||||||||||| |||||||||||||| || |||| ||||||||||| ||||    
T  18844608 tgtaccaatttagtcccctatgttttactccgttcctagttttagtccttt 18844658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 827 - 872
Target Start/End: Complemental strand, 37189541 - 37189496
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 872  Q
    |||||||||| |||||||| ||||||||| |||| |||||||||||    
T  37189541 tgtaccaattcggtcccctgtgttttgctccgttcctagttttagt 37189496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 3e-57; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 761 - 931
Target Start/End: Original strand, 16973064 - 16973234
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 860  Q
    |||||||||||||| ||||||||||||||||||| ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16973064 ggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactatagtttgtaccaatttggtcccctatgttttgcttcgtt 16973163  T
Q  861 actagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
    |||||||||| ||||||||| |||||||||||        ||||||||||||| |||||||||||||||||    
T  16973164 actagttttaattctttctgttagtttctctcataaaaacgttaacttatgtaccaatttggtcccctatg 16973234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 760 - 929
Target Start/End: Original strand, 2916377 - 2916545
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 859  Q
    ||||||||||||||| ||| || |||||||||||| |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2916377 aggcttattcaatcacccgatctcttaacttaattgattgtctcaatttgatcccctaactataatttgtaccaatttggtcccctatgttttgctttgt 2916476  T
Q  860 tactagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtccccta 929  Q
    ||||||||||| | ||||||| |||||||||||        ||||||||||||| |||||||||||||||    
T  2916477 tactagttttaatcctttctgttagtttctctcaaaaaac-gttaacttatgtaccaatttggtccccta 2916545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 763 - 931
Target Start/End: Complemental strand, 44594583 - 44594415
Alignment:
Q  763 cttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 862  Q
    |||||||||||| ||||||| |||| |||||| ||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  44594583 cttattcaatcacccggtcctttaatttaattgattgtctcaatttggtcccctaactataatttgtatcaatttggtccattatgttttgcttcgttac 44594484  T
Q  863 tagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
    ||||||||||  ||||||||||||||||||        || |||||||||| |||||| ||||||||||    
T  44594483 tagttttagtcatttctggtagtttctctcaaaaaaacgtaaacttatgtaccaatttagtcccctatg 44594415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 779 - 931
Target Start/End: Complemental strand, 38982886 - 38982734
Alignment:
Q  779 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 878  Q
    |||||||||||||||| ||||||||||||| ||||| ||||||||||||||| ||||||||| || ||||||||||||| ||||||||||||||  ||||    
T  38982886 gtcccttaacttaattgattgtctcaatttggtcccttaactataatttgtatcaatttggttccttatgttttgcttcattactagttttagtcatttc 38982787  T
Q  879 tggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
    ||||||||||||||        ||||||||||||| |||||||||||| ||||    
T  38982786 tggtagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccttatg 38982734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 759 - 879
Target Start/End: Original strand, 44594246 - 44594367
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtc-ccctaactataatttgtaccaatttggtcccctatgttttgcttc 857  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||| ||  |||||||||||||||||| ||||||||||| ||||||||||||      
T  44594246 taggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtgtccctaactataatttgtatcaatttggtcctctatgttttgctct 44594345  T
Q  858 gttactagttttagttctttct 879  Q
    ||||||||||||||||||||||    
T  44594346 gttactagttttagttctttct 44594367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 5e-37
Query Start/End: Original strand, 760 - 891
Target Start/End: Original strand, 40987656 - 40987787
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 859  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||| ||| | ||||||||| || ||    
T  40987656 aggcttatttaatcatccggtcccttaacttaattgattgtctcaatttggttccctaactataatttgtaccaatttagtctcatatgttttgatttgt 40987755  T
Q  860 tactagttttagttctttctggtagtttctct 891  Q
    |||||||||||||  ||| || ||||||||||    
T  40987756 tactagttttagtcttttatgttagtttctct 40987787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 760 - 892
Target Start/End: Complemental strand, 16973412 - 16973280
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 859  Q
    |||||||||||||||   ||||||||||||||||| ||||||||||||| ||||||||||||||||||||  ||||||||||| |||||||||||| | |    
T  16973412 aggcttattcaatcacatggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtgtcaatttggtcctctatgttttgctccat 16973313  T
Q  860 tactagttttagttctttctggtagtttctctc 892  Q
    |||||||||||||  ||||||  ||||||||||    
T  16973312 tactagttttagtcatttctgtcagtttctctc 16973280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 759 - 872
Target Start/End: Complemental strand, 11533794 - 11533680
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggt-cccctatgttttgcttc 857  Q
    |||||||||||||||||| |||| |||||||||| | ||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||     
T  11533794 taggcttattcaatcatcaggtctcttaacttaagtgattgtctcaatttggtcccccaactataatttgtaccaatttggtccccctatgttttgcttt 11533695  T
Q  858 gttactagttttagt 872  Q
     ||||||||||||||    
T  11533694 attactagttttagt 11533680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 786 - 931
Target Start/End: Complemental strand, 24125975 - 24125836
Alignment:
Q  786 aacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagt 885  Q
    ||||||||||||| ||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||      ||||||||||||||||||| ||||    
T  24125975 aacttaattaattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagttctttctgttagt 24125882  T
Q  886 ttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
    ||||||          ||||||||||||||||||||||||||||||    
T  24125881 ttctctaaaaaaaacattaacttatgtatcaatttggtcccctatg 24125836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 752 - 891
Target Start/End: Complemental strand, 13559657 - 13559519
Alignment:
Q  752 taaaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttt 851  Q
    |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||| || |||||||||||||||||| ||| |||||||| | || ||    
T  13559657 taaaaaataggcttattcaatcatccggtcccttaacttaattgattgtttcaatttggttccctaactataatttgtatcaa-ttggtcccttgtgctt 13559559  T
Q  852 tgcttcgttactagttttagttctttctggtagtttctct 891  Q
    ||||  |||||||| ||||||  ||| || ||||||||||    
T  13559558 tgctctgttactagatttagtcatttatgttagtttctct 13559519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 761 - 892
Target Start/End: Original strand, 38982557 - 38982688
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 860  Q
    |||||| ||||||| ||| ||| ||||||||||| ||||||||||||| |  |||||||||||||||||||||||||||||   ||||||||||||||||    
T  38982557 ggcttaatcaatcacccgatcctttaacttaattgattgtctcaatttggctccctaactataatttgtaccaatttggtcatttatgttttgcttcgtt 38982656  T
Q  861 actagttttagttctttctggtagtttctctc 892  Q
     ||||||||||| ||||||  ||||| |||||    
T  38982657 gctagttttagtcctttctattagttactctc 38982688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 764 - 892
Target Start/End: Complemental strand, 2916721 - 2916593
Alignment:
Q  764 ttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 863  Q
    |||||||||||||   | ||||||||||||| ||||||||||||| ||||||||||||| ||||||||||| ||| ||| |||| |||||||  ||||||    
T  2916721 ttattcaatcatctaattccttaacttaattgattgtctcaatttggtcccctaactattatttgtaccaacttgatcctctatattttgctctgttact 2916622  T
Q  864 agttttagttctttctggtagtttctctc 892  Q
    |||||| || ||||||| |||||||||||    
T  2916621 agttttggtcctttctgttagtttctctc 2916593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 767 - 920
Target Start/End: Complemental strand, 40987987 - 40987834
Alignment:
Q  767 ttcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagt 866  Q
    |||||||| |||||| ||||||||||||||||||||||||||  ||| ||||||||||||||||  ||||||||||||||| |||||||   || ||| |    
T  40987987 ttcaatcacccggtctcttaacttaattaattgtctcaatttgatcctctaactataatttgtattaatttggtcccctatattttgctctattgctaat 40987888  T
Q  867 tttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaattt 920  Q
    ||||||  |||||| |||||||||||        ||||||||||||||||||||    
T  40987887 tttagtcatttctgttagtttctctcaaaaaaccgttaacttatgtatcaattt 40987834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 786 - 891
Target Start/End: Complemental strand, 24126245 - 24126146
Alignment:
Q  786 aacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagt 885  Q
    ||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||      ||||||||||| |||| || ||||    
T  24126245 aacttaattgattttctcaatttggtctcctaactataatttgtaccaatttggtcccttatgttttgct------ctagttttagtcctttatgttagt 24126152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 761 - 828
Target Start/End: Original strand, 24125670 - 24125737
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttg 828  Q
    |||||||||| ||| ||||||||||||||||||| |||||||||||||  ||||||||||||||||||    
T  24125670 ggcttattcactcaaccggtcccttaacttaattgattgtctcaatttgatcccctaactataatttg 24125737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 827 - 880
Target Start/End: Original strand, 16973213 - 16973266
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 880  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||    
T  16973213 tgtaccaatttggtcccctatgttttgctccgttactagttttagtcctttctg 16973266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 827 - 880
Target Start/End: Complemental strand, 44594436 - 44594383
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 880  Q
    ||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||    
T  44594436 tgtaccaatttagtcccctatgttttgctccgttcctagttttagtcctttctg 44594383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 814 - 891
Target Start/End: Original strand, 13559357 - 13559434
Alignment:
Q  814 cctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagtttctct 891  Q
    ||||||||||||||||  |||||||||| | ||| ||||| || |||| ||||||||||  |||||| ||||||||||    
T  13559357 cctaactataatttgtttcaatttggtctcatatattttgttttgttattagttttagtcatttctgttagtttctct 13559434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 827 - 880
Target Start/End: Complemental strand, 38982755 - 38982702
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 880  Q
    ||||||||||||||||| ||||||||||| |||| || |||||||| |||||||    
T  38982755 tgtaccaatttggtcccttatgttttgctccgttcctggttttagtcctttctg 38982702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 827 - 872
Target Start/End: Original strand, 2916526 - 2916571
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 872  Q
    ||||||||||||||||||||  ||||||| ||||| ||||||||||    
T  2916526 tgtaccaatttggtcccctacattttgctccgttattagttttagt 2916571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 827 - 872
Target Start/End: Complemental strand, 24125857 - 24125812
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 872  Q
    |||| ||||||||||||||||||||||||  |||| ||||||||||    
T  24125857 tgtatcaatttggtcccctatgttttgctctgttattagttttagt 24125812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 2e-54; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 760 - 892
Target Start/End: Original strand, 13884488 - 13884620
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 859  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  13884488 aggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggccccctatgttttgcttcgt 13884587  T
Q  860 tactagttttagttctttctggtagtttctctc 892  Q
    |||||||||||||  ||||||||||||||||||    
T  13884588 tactagttttagtcttttctggtagtttctctc 13884620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 759 - 931
Target Start/End: Original strand, 42126380 - 42126553
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 858  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||  | | |||||||||||||||| |||||||| ||||||||||||||||||    
T  42126380 taggcttattcaatcacccggtcccttaacttaattaattgtctcaatttgattctctaactataatttgtatcaatttggccccctatgttttgcttcg 42126479  T
Q  859 ttactagttttagttctttctggtagtttctct-cnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
     ||||||||||||| |||||||||||||||||| |        |||||||||||||||||||||||||||||||    
T  42126480 ctactagttttagtcctttctggtagtttctctacaaaaaaacgttaacttatgtatcaatttggtcccctatg 42126553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 4e-50
Query Start/End: Original strand, 761 - 890
Target Start/End: Complemental strand, 13884835 - 13884706
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 860  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13884835 ggcttattcaatcacccggtcccttaacttaattgattgtctcaatttagtcccctaactataatttgtaccaatttggtcctctatgttttgcttcgtt 13884736  T
Q  861 actagttttagttctttctggtagtttctc 890  Q
    ||| |||||||| |||| || |||||||||    
T  13884735 actggttttagtcctttttgttagtttctc 13884706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 760 - 931
Target Start/End: Original strand, 29714541 - 29714712
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 859  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||||||||||||||||| |||||||| ||    
T  29714541 aggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccaaactatagtttgtaccaatttggtcccctatattttgctttgt 29714640  T
Q  860 tactagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
    |||||| |||| |  |||||| |||||||||||        ||||||||||||| |||||||||| ||||||    
T  29714641 tactagctttaatcatttctgttagtttctctcgtaaaaacgttaacttatgtaccaatttggtctcctatg 29714712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 779 - 892
Target Start/End: Complemental strand, 2554179 - 2554066
Alignment:
Q  779 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 878  Q
    |||||||||||||||| |||||||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||| |||||| ||||||||||||||    
T  2554179 gtcccttaacttaattgattgtctcaatttgatcccctaactataatttgttccaatttggtctcctatgttttgctttgttacttgttttagttctttc 2554080  T
Q  879 tggtagtttctctc 892  Q
    || |||||||||||    
T  2554079 tgttagtttctctc 2554066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 761 - 891
Target Start/End: Complemental strand, 42126731 - 42126601
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 860  Q
    |||||||||||||| ||||||||||||||||||| ||| |||||||||  |||||||||||||||||||||||||||||||| ||| ||||||||  ||     
T  42126731 ggcttattcaatcacccggtcccttaacttaattgattatctcaatttgatcccctaactataatttgtaccaatttggtcctctaagttttgctctgtc 42126632  T
Q  861 actagttttagttctttctggtagtttctct 891  Q
    |||| |||||||  |||||| ||||||||||    
T  42126631 actaattttagtcatttctgttagtttctct 42126601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 759 - 892
Target Start/End: Complemental strand, 11868030 - 11867898
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 858  Q
    |||||||||||||||| | ||||| ||||||||||| ||||||||||||| || || ||||||||||||||| ||||||||||| |||||||||| || |    
T  11868030 taggcttattcaatcacctggtcc-ttaacttaattgattgtctcaatttggttccttaactataatttgtatcaatttggtcctctatgttttgatttg 11867932  T
Q  859 ttactagttttagttctttctggtagtttctctc 892  Q
    | |||||||||||| |||| || |||||||||||    
T  11867931 tcactagttttagtcctttatgttagtttctctc 11867898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 761 - 872
Target Start/End: Complemental strand, 29714889 - 29714778
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 860  Q
    ||||||||  |||| | ||||||||||||||||| ||||| | ||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||| ||    
T  29714889 ggcttatttgatcacctggtcccttaacttaattgattgttttaatttggtcccttaactataatttgtatcaatttggtcctctatgttttgcttcatt 29714790  T
Q  861 actagttttagt 872  Q
    ||||||||||||    
T  29714789 actagttttagt 29714778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 760 - 858
Target Start/End: Original strand, 43416262 - 43416360
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 858  Q
    |||||||||||||||| ||||| |||||||||||| ||||||| |||||| |||||||||||||||||||| ||||||  || ||||||||||| ||||    
T  43416262 aggcttattcaatcattcggtctcttaacttaattgattgtcttaatttaatcccctaactataatttgtatcaatttaatctcctatgttttgtttcg 43416360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 810 - 889
Target Start/End: Complemental strand, 14996758 - 14996678
Alignment:
Q  810 gtcccctaactataatttgtaccaatttggtcccc-tatgttttgcttcgttactagttttagttctttctggtagtttct 889  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||| ||||||||||||||| ||||||| ||||||||    
T  14996758 gtcccctaattataatttgtaccaatttgatccccctatgttttgctttgttactagttttagtcctttctgttagtttct 14996678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 830 - 880
Target Start/End: Original strand, 2554002 - 2554052
Alignment:
Q  830 accaatttggtcccctatgttttgcttcgttactagttttagttctttctg 880  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||||||    
T  2554002 accaatttggtcccctatgttttacttcgttactagttttagtcctttctg 2554052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 827 - 872
Target Start/End: Original strand, 14996608 - 14996653
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 872  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||    
T  14996608 tgtactaatttggtcccctatgttttgcttcgttactagttttagt 14996653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 800 - 892
Target Start/End: Complemental strand, 15862632 - 15862540
Alignment:
Q  800 tctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctggtagtttctctc 892  Q
    |||||||||  ||||||||||||||||||||  |||||||||| ||||| |||||| ||||||| |||||| | |||||   |||||||||||    
T  15862632 tctcaatttgatcccctaactataatttgtattaatttggtcctctatgatttgctccgttactggttttaatactttccattagtttctctc 15862540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 827 - 880
Target Start/End: Original strand, 29714691 - 29714744
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 880  Q
    ||||||||||||||| |||||||||| || |||||||||||||||| |||||||    
T  29714691 tgtaccaatttggtctcctatgttttactccgttactagttttagtcctttctg 29714744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 779 - 887
Target Start/End: Complemental strand, 26746067 - 26745959
Alignment:
Q  779 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 878  Q
    ||||||||||||| ||  |||| |||| || ||||||||| ||||||||||||||| || |||| ||| |||||||| | |||| |||||  || |||||    
T  26746067 gtcccttaacttatttgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccattaccagtttcggtcctttc 26745968  T
Q  879 tggtagttt 887  Q
    || ||||||    
T  26745967 tgttagttt 26745959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 779 - 887
Target Start/End: Original strand, 26745281 - 26745389
Alignment:
Q  779 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 878  Q
    ||||||||||||||||  ||||   || || ||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  || |||||    
T  26745281 gtcccttaacttaattgtttgtactaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttc 26745380  T
Q  879 tggtagttt 887  Q
    || ||||||    
T  26745381 tgttagttt 26745389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 827 - 872
Target Start/End: Original strand, 42126532 - 42126577
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 872  Q
    |||| |||||||||||||||||||||||| ||||  ||||||||||    
T  42126532 tgtatcaatttggtcccctatgttttgctccgttcttagttttagt 42126577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 97; Significance: 4e-47; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 760 - 892
Target Start/End: Complemental strand, 23053 - 22921
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 859  Q
    ||||||||||||||| ||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||| ||| |||||||||||| |||    
T  23053 aggcttattcaatcacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttgatcctctatgttttgctccgt 22954  T
Q  860 tactagttttagttctttctggtagtttctctc 892  Q
    ||||||||||||| ||||||| |||||||||||    
T  22953 tactagttttagtcctttctgttagtttctctc 22921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 4e-47; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 759 - 891
Target Start/End: Original strand, 28715640 - 28715772
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 858  Q
    |||| ||||||||||| ||||||||||||||||||||||||| | ||||| ||  ||||||||||||||||| |||||||||||||||||||||||||||    
T  28715640 taggtttattcaatcacccggtcccttaacttaattaattgttttaatttggtttcctaactataatttgtatcaatttggtcccctatgttttgcttcg 28715739  T
Q  859 ttactagttttagttctttctggtagtttctct 891  Q
    |||||||||||||| ||||||||||||||||||    
T  28715740 ttactagttttagtcctttctggtagtttctct 28715772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 759 - 872
Target Start/End: Original strand, 30862216 - 30862329
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 858  Q
    ||||||||||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| |    
T  30862216 taggcttattcaatcattcggtcccttaacttaattgattgtctgaatttggtcccctaactataatttgtaccaatttggtcccctatattttgctttg 30862315  T
Q  859 ttactagttttagt 872  Q
    ||||||||||||||    
T  30862316 ttactagttttagt 30862329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 759 - 892
Target Start/End: Complemental strand, 28715991 - 28715858
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 858  Q
    |||||||||||||| | ||||||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||||||||  |    
T  28715991 taggcttattcaattacccggtcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcctctaagttttgctcag 28715892  T
Q  859 ttactagttttagttctttctggtagtttctctc 892  Q
    | ||||||||||||  |||||| |||||||||||    
T  28715891 tcactagttttagtcatttctgttagtttctctc 28715858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 760 - 892
Target Start/End: Original strand, 41985909 - 41986041
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 859  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||||  |||||||||||||||||||  |||||||||||| |||||||||||| ||    
T  41985909 aggcttattcaatcacccagtcccttaacttaattgattgtctcaatttgatcccctaactataatttgtttcaatttggtcccatatgttttgctttgt 41986008  T
Q  860 tactagttttagttctttctggtagtttctctc 892  Q
    ||||| ||||||| ||||| | |||||||||||    
T  41986009 tactaattttagtcctttccgttagtttctctc 41986041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 752 - 892
Target Start/End: Original strand, 6474271 - 6474412
Alignment:
Q  752 taaaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatg-tt 850  Q
    |||||| || ||||||||||| | | | ||||||||||||||| |||||||||||||  ||||||||||||||||| || ||||||||||||||||| ||    
T  6474271 taaaaattatgcttattcaattaccggatcccttaacttaattgattgtctcaatttgatcccctaactataatttatatcaatttggtcccctatgttt 6474370  T
Q  851 ttgcttcgttactagttttagttctttctggtagtttctctc 892  Q
    |||||| |||||||||||||||  |||||| |||||||||||    
T  6474371 ttgctttgttactagttttagtcttttctgttagtttctctc 6474412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 759 - 931
Target Start/End: Complemental strand, 6474629 - 6474458
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 858  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||| ||||| ||| ||||||||||| ||||||| ||||| |||| |||| ||||||  |    
T  6474629 taggcttattcaatcacccgatcccttaacttaattgattgtcttaatttggtctcctaactataa-ttgtaccgatttgctcccttatgctttgctctg 6474531  T
Q  859 ttactagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
    |||||||||||||| |||| || |||||||||||        ||||||||||||| |||||||||||| ||||    
T  6474530 ttactagttttagtcctttatgttagtttctctcaaaaaaacgttaacttatgtaccaatttggtcccttatg 6474458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 778 - 891
Target Start/End: Complemental strand, 47373792 - 47373679
Alignment:
Q  778 ggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 877  Q
    ||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||| ||| | ||||||||| |  ||||||||||||| | ||||    
T  47373792 ggtcccttaacttaattgattgtctcaatttggtcccctaattataatttgtaccaatttagtctcatatgttttgatgtgttactagttttaatccttt 47373693  T
Q  878 ctggtagtttctct 891  Q
     || ||||||||||    
T  47373692 atgttagtttctct 47373679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 764 - 892
Target Start/End: Complemental strand, 30862564 - 30862436
Alignment:
Q  764 ttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 863  Q
    |||||||||||   |||||||||| | |||| ||||| ||||||| || |||||||||||||||||| |||||||||||| |||||||||||  ||||||    
T  30862564 ttattcaatcaattggtcccttaattgaattgattgtttcaattttgttccctaactataatttgtatcaatttggtcccttatgttttgctctgttact 30862465  T
Q  864 agttttagttctttctggtagtttctctc 892  Q
    | |||||||  |||||| |||||||||||    
T  30862464 aattttagtcttttctgttagtttctctc 30862436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 761 - 931
Target Start/End: Original strand, 47373462 - 47373633
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactata--atttgtaccaatttggtcccctatgttttgcttcg 858  Q
    ||||||||||||||  || || |||||||||||| |||||||||||||  ||| |||| ||||  ||||||||||||||||||||||||||||||||  |    
T  47373462 ggcttattcaatcactcgatctcttaacttaattgattgtctcaatttgatcctctaattatataatttgtaccaatttggtcccctatgttttgctctg 47373561  T
Q  859 ttactagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
    || |||||||||||  ||| || |||||||||||        ||||||||||||| |||||| ||||||||||    
T  47373562 ttgctagttttagtcatttatgttagtttctctcaaaaaac-gttaacttatgtaccaatttagtcccctatg 47373633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 760 - 833
Target Start/End: Complemental strand, 41986256 - 41986183
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtacca 833  Q
    ||||||||||||||| ||||| |||||||||||||  ||||||||||||  |||||||||||||||||||||||    
T  41986256 aggcttattcaatcacccggttccttaacttaattgtttgtctcaatttgatcccctaactataatttgtacca 41986183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 779 - 887
Target Start/End: Complemental strand, 38408229 - 38408121
Alignment:
Q  779 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 878  Q
    ||||||||||||||||  |||| |||| || ||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  || |||||    
T  38408229 gtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttc 38408130  T
Q  879 tggtagttt 887  Q
    || ||||||    
T  38408129 tgttagttt 38408121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 779 - 887
Target Start/End: Complemental strand, 6271296 - 6271188
Alignment:
Q  779 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 878  Q
    ||||||||||||||||  || |  ||| || ||||||||| ||||||||||||||| || ||||  || |||||||| ||||||||||||  || |||||    
T  6271296 gtcccttaacttaattgtttctaccaaattggtcccctaaatataatttgtaccaaattcgtcctttaagttttgctccgttactagtttcggtcctttc 6271197  T
Q  879 tggtagttt 887  Q
    || ||||||    
T  6271196 tgttagttt 6271188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 827 - 877
Target Start/End: Complemental strand, 41986108 - 41986058
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 877  Q
    ||||||||||||||||||||||||||||| |||| ||| ||||||| ||||    
T  41986108 tgtaccaatttggtcccctatgttttgctccgttgctaattttagtccttt 41986058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 779 - 868
Target Start/End: Original strand, 6270237 - 6270326
Alignment:
Q  779 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttt 868  Q
    ||||||||||||||||| ||||   || || ||| ||||| ||||||||||||||| || |||| ||| || ||||| ||||||||||||    
T  6270237 gtcccttaacttaattatttgtactaaattggtcgcctaaatataatttgtaccaaattcgtcctctaagtgttgctccgttactagttt 6270326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 827 - 872
Target Start/End: Original strand, 47373612 - 47373657
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 872  Q
    ||||||||||| ||||||||||||||||| ||||| ||||||||||    
T  47373612 tgtaccaatttagtcccctatgttttgctccgttattagttttagt 47373657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 759 - 815
Target Start/End: Complemental strand, 22226721 - 22226665
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccc 815  Q
    |||||||||||||||| | | ||||||| ||||||| ||||||||||||| ||||||    
T  22226721 taggcttattcaatcacctgatcccttagcttaattgattgtctcaatttggtcccc 22226665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 779 - 887
Target Start/End: Original strand, 38407450 - 38407558
Alignment:
Q  779 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 878  Q
    |||||||||||||||   ||||  ||| || ||||||||| ||||||||||||||| || |||| ||| ||||||||  ||||| |||||  || |||||    
T  38407450 gtcccttaacttaatggtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctctgttaccagtttcggtcctttc 38407549  T
Q  879 tggtagttt 887  Q
    || ||||||    
T  38407550 tgttagttt 38407558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 4e-47; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 4e-47
Query Start/End: Original strand, 760 - 892
Target Start/End: Complemental strand, 51663598 - 51663466
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 859  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||  ||    
T  51663598 aggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtagcaatttggtcctctatgttttgctatgt 51663499  T
Q  860 tactagttttagttctttctggtagtttctctc 892  Q
    |||||||||||||  |||||| |||||||||||    
T  51663498 tactagttttagtcatttctgttagtttctctc 51663466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 763 - 931
Target Start/End: Complemental strand, 46003593 - 46003425
Alignment:
Q  763 cttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 862  Q
    |||||| ||||||| ||||||||||||||||| ||||||||||||| |||||||||||| |||||||||||||||| |||||| ||||||||||| ||||    
T  46003593 cttatttaatcatctggtcccttaacttaattgattgtctcaatttggtcccctaactaaaatttgtaccaatttgatcccctttgttttgcttcattac 46003494  T
Q  863 tagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
    |||||||||| ||||||||||||||||||         ||||||||||||| ||||||||||| |||||    
T  46003493 tagttttagtcctttctggtagtttctctaaaaaaaacgttaacttatgtaccaatttggtcctctatg 46003425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 9e-45
Query Start/End: Original strand, 760 - 891
Target Start/End: Original strand, 40244624 - 40244756
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttgg-tcccctatgttttgcttcg 858  Q
    ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |    
T  40244624 aggcttattcaatcatccgatcccttaacttaattgattgtctcaatttggtcccttaactataatttgtaccaatttggttcccctatgttttgctttg 40244723  T
Q  859 ttactagttttagttctttctggtagtttctct 891  Q
    ||||||||||||||  |||||| ||||||||||    
T  40244724 ttactagttttagtcatttctgttagtttctct 40244756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 761 - 931
Target Start/End: Original strand, 51663250 - 51663420
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 860  Q
    |||||||| ||||| |||||| |||||||||||| ||||| | ||| | |||| |||||||||||||||| |||||| ||||||||||||||||||||||    
T  51663250 ggcttatttaatcacccggtctcttaacttaattgattgttttaatatggtccactaactataatttgtatcaatttagtcccctatgttttgcttcgtt 51663349  T
Q  861 actagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
    ||||||||||||  ||||||||||||||||||        |||||||||||||  ||||||||||||||||    
T  51663350 actagttttagtcatttctggtagtttctctcaaaaaaacgttaacttatgtactaatttggtcccctatg 51663420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 760 - 891
Target Start/End: Original strand, 20537925 - 20538056
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 859  Q
    |||| |||| ||||||| ||||||||||||||||| ||  | |||||||  ||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  20537925 aggcctattgaatcatctggtcccttaacttaattgatattatcaatttgatcccctaactataatttgttccaatttggtcccctatgttttgcttcat 20538024  T
Q  860 tactagttttagttctttctggtagtttctct 891  Q
    ||||||||||||| ||||||  ||||||||||    
T  20538025 tactagttttagtcctttctattagtttctct 20538056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 762 - 892
Target Start/End: Complemental strand, 20538280 - 20538150
Alignment:
Q  762 gcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtta 861  Q
    ||||||||||||| ||||||| |||| |||||| |||||||||||||  |||||||||||||||||||| |||||| ||   |||||||||||| |||||    
T  20538280 gcttattcaatcacccggtcctttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttagttatctatgttttgctccgtta 20538181  T
Q  862 ctagttttagttctttctggtagtttctctc 892  Q
    |||||||||||  |||||| |||||||||||    
T  20538180 ctagttttagtcatttctgttagtttctctc 20538150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 754 - 892
Target Start/End: Original strand, 46003241 - 46003379
Alignment:
Q  754 aaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttg 853  Q
    ||||||||| ||||||||||| ||||||| ||||||||||| ||||| | ||||| ||||||||||||||||||||| ||||||||||| ||||||| ||    
T  46003241 aaaagtaggtttattcaatcacccggtcctttaacttaattgattgttttaatttggtcccctaactataatttgtatcaatttggtcctctatgttctg 46003340  T
Q  854 cttcgttactagttttagttctttctggtagtttctctc 892  Q
     |  ||||| ||||||||| |||| || |||||||||||    
T  46003341 ttctgttacaagttttagtcctttttgttagtttctctc 46003379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 764 - 872
Target Start/End: Complemental strand, 40364301 - 40364194
Alignment:
Q  764 ttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 863  Q
    |||||||||||   ||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||||||||| | |||||||||||| | |||||||    
T  40364301 ttattcaatcacttggtcccttaacttaattgattgtttcaatttggtctcctaactataatttgtaccaatttgat-ccctatgttttgttccgttact 40364203  T
Q  864 agttttagt 872  Q
    |||||||||    
T  40364202 agttttagt 40364194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 760 - 892
Target Start/End: Original strand, 40364040 - 40364172
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 859  Q
    |||||||||| |||| ||  ||||||||||||||| ||| ||| ||||| ||||| ||| ||||||||||| ||||||| |||||| | ||||||| |||    
T  40364040 aggcttattcgatcacccaatcccttaacttaattgattatcttaatttggtcccataattataatttgtatcaatttgatcccctgtattttgctccgt 40364139  T
Q  860 tactagttttagttctttctggtagtttctctc 892  Q
    || ||||||||||  ||| || |||||||||||    
T  40364140 tattagttttagtcatttttgttagtttctctc 40364172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 760 - 823
Target Start/End: Complemental strand, 40244936 - 40244873
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactata 823  Q
    ||||||||||||||| || |||||||||||||||| ||||||||||||| ||||||||||||||    
T  40244936 aggcttattcaatcaccccgtcccttaacttaattgattgtctcaatttggtcccctaactata 40244873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 827 - 880
Target Start/End: Complemental strand, 46003446 - 46003393
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 880  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  46003446 tgtaccaatttggtcctctatgttttgcttcgttactagttttagtcctttctg 46003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 827 - 872
Target Start/End: Original strand, 20538076 - 20538121
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 872  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||    
T  20538076 tgtaccaatttggtcccctatgttttgctttgttattagttttagt 20538121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 827 - 872
Target Start/End: Original strand, 51663399 - 51663444
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 872  Q
    ||||| |||||||||||||||||||||||  ||| |||||||||||    
T  51663399 tgtactaatttggtcccctatgttttgctctgttcctagttttagt 51663444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 96; Significance: 1e-46; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 761 - 872
Target Start/End: Complemental strand, 5382 - 5271
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 860  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  5382 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 5283  T
Q  861 actagttttagt 872  Q
    | ||||||||||    
T  5282 attagttttagt 5271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 761 - 872
Target Start/End: Complemental strand, 2216925 - 2216814
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 860  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2216925 ggcttattcaatcatccggtcccttaacttaattgattgtctcaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgtt 2216826  T
Q  861 actagttttagt 872  Q
    | ||||||||||    
T  2216825 attagttttagt 2216814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 760 - 892
Target Start/End: Original strand, 24798624 - 24798756
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 859  Q
    ||||||||||||| || ||||||||||||||||||  |||| ||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  24798624 aggcttattcaattattcggtcccttaacttaattggttgtttcaatttggtcccctgactataatttgtaccaatttggtcctctatgttttgcttcgt 24798723  T
Q  860 tactagttttagttctttctggtagtttctctc 892  Q
    |||||||||||||  |||||| |||||||||||    
T  24798724 tactagttttagtcatttctgttagtttctctc 24798756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 759 - 887
Target Start/End: Complemental strand, 24798971 - 24798843
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 858  Q
    |||||||||||||||| ||| |||||||| |||||| ||||||| |||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  24798971 taggcttattcaatcacccgatcccttaaattaattgattgtcttaatttgatcccctaactataatttgtatcaatttggtcccctatgttttgcttcg 24798872  T
Q  859 ttactagttttagttctttctggtagttt 887  Q
    |||||||||||||| |||||| |||||||    
T  24798871 ttactagttttagtcctttctagtagttt 24798843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 766 - 931
Target Start/End: Original strand, 11643754 - 11643919
Alignment:
Q  766 attcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactag 865  Q
    ||||||||| |||||||||||| |||||| |||||||||||||  |||||||||||||||||||| ||||||||| |||||||||||| || ||||||||    
T  11643754 attcaatcacccggtcccttaatttaattgattgtctcaatttgatcccctaactataatttgtatcaatttggttccctatgttttgttttgttactag 11643853  T
Q  866 ttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctatg 931  Q
    ||||||| || |||| ||||||||||         ||||||||||||| |||||||||||||||||    
T  11643854 ttttagtcctctctgttagtttctctaaaaaaaacgttaacttatgtaccaatttggtcccctatg 11643919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 761 - 930
Target Start/End: Complemental strand, 18495079 - 18494911
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgtt 860  Q
    ||||||||||||||||  |||||||||||||||| ||| | | |||||  |||| ||||||||||||||| |||||||||||||||| ||||| | ||||    
T  18495079 ggcttattcaatcatctagtcccttaacttaattgattatattaatttgatcccttaactataatttgtatcaatttggtcccctatattttgatccgtt 18494980  T
Q  861 actagttttagttctttctggtagtttctctcnnnnnnntgttaacttatgtatcaatttggtcccctat 930  Q
    | |||||||||||||||||| ||||||||||         ||||||||||||| ||||||||||||||||    
T  18494979 attagttttagttctttctgttagtttctct-aaaaaaacgttaacttatgtagcaatttggtcccctat 18494911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 759 - 855
Target Start/End: Original strand, 24690353 - 24690449
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgct 855  Q
    |||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||    
T  24690353 taggcttattcaatcacccggtctcttaacttaattgattgtctcaatttggtccccttactataatttgtaccaatttggtcctctatgttttgct 24690449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 759 - 872
Target Start/End: Complemental strand, 11644097 - 11643985
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagt-cccctaactataatttgtaccaatttggtcccctatgttttgcttc 857  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||||||||||||||||||| ||||||||| ||||||||||| |||     
T  11644097 taggcttattcaatcacccggtcccttaacttaattgattgtctcaatttggtccccctaactataatttgtatcaatttggt-ccctatgtttt-cttt 11644000  T
Q  858 gttactagttttagt 872  Q
    |||||||||||||||    
T  11643999 gttactagttttagt 11643985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 759 - 891
Target Start/End: Original strand, 18494732 - 18494862
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 858  Q
    ||||||||||||||||   ||||||||||||| ||| ||||||||||||| || ||||| ||||||||||||||| |||||||||||||| ||||||| |    
T  18494732 taggcttattcaatcacatggtcccttaactttattgattgtctcaatttggt-ccctagctataatttgtaccattttggtcccctatg-tttgctttg 18494829  T
Q  859 ttactagttttagttctttctggtagtttctct 891  Q
    |||||||||||||| |||| || ||||||||||    
T  18494830 ttactagttttagtcctttttgttagtttctct 18494862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 763 - 847
Target Start/End: Complemental strand, 24690691 - 24690607
Alignment:
Q  763 cttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctat 847  Q
    |||||||||||| ||| ||||||||||||||| ||||| | ||||| || |||||||||||||||||||||||||||||||||||    
T  24690691 cttattcaatcacccgatcccttaacttaattgattgttttaatttggttccctaactataatttgtaccaatttggtcccctat 24690607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 827 - 872
Target Start/End: Original strand, 11643898 - 11643943
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagt 872  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  11643898 tgtaccaatttggtcccctatgttttgctccgttactagttttagt 11643943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 779 - 868
Target Start/End: Original strand, 9954825 - 9954914
Alignment:
Q  779 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttt 868  Q
    ||||||||||||||||  ||||  ||| || ||||||||| ||||||||||||||| || |||| ||| |||||||| |||||| |||||    
T  9954825 gtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttaccagttt 9954914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 779 - 887
Target Start/End: Complemental strand, 9955698 - 9955590
Alignment:
Q  779 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 878  Q
    ||||||||||||||||  |||| |||| || ||||||||| ||||||||||||||| ||  ||| ||| ||||||||  ||||| |||||  || |||||    
T  9955698 gtcccttaacttaattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcatcctctaagttttgctctgttaccagtttcggtcctttc 9955599  T
Q  879 tggtagttt 887  Q
    || ||||||    
T  9955598 tgttagttt 9955590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 826 - 878
Target Start/End: Complemental strand, 24798822 - 24798770
Alignment:
Q  826 ttgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttc 878  Q
    ||||| |||||||||||||||||||||||| |||| ||||||||||| |||||    
T  24798822 ttgtatcaatttggtcccctatgttttgctccgttcctagttttagtcctttc 24798770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 827 - 880
Target Start/End: Complemental strand, 18494931 - 18494878
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 880  Q
    |||| |||||||||||||||| ||| |||   ||||||||||||||||||||||    
T  18494931 tgtagcaatttggtcccctatatttcgctctattactagttttagttctttctg 18494878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 827 - 880
Target Start/End: Complemental strand, 24690557 - 24690504
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttctg 880  Q
    ||||||||||||||| |||||||||||||   ||| |||||||||| |||||||    
T  24690557 tgtaccaatttggtctcctatgttttgctctattaatagttttagtcctttctg 24690504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 2e-45; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 759 - 892
Target Start/End: Original strand, 39161286 - 39161419
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 858  Q
    |||||||||||||||| ||| ||| ||||||||||| | ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39161286 taggcttattcaatcacccgatcctttaacttaattgaatgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 39161385  T
Q  859 ttactagttttagttctttctggtagtttctctc 892  Q
    |||||||||||||| |||||||  ||||||||||    
T  39161386 ttactagttttagtcctttctgaaagtttctctc 39161419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 748 - 892
Target Start/End: Complemental strand, 39161647 - 39161503
Alignment:
Q  748 attataaaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctat 847  Q
    |||||||||  ||||||||||||| |||||||| ||||||||||||| ||||| | ||||| |||||||||||||||||||||||||||| |||| ||||    
T  39161647 attataaaatctaggcttattcaaccatccggttccttaacttaattgattgttttaatttggtcccctaactataatttgtaccaatttagtcctctat 39161548  T
Q  848 gttttgcttcgttactagttttagttctttctggtagtttctctc 892  Q
    |||||||| ||||| |||||||||| ||||||| |||||||||||    
T  39161547 gttttgctccgttattagttttagtcctttctgttagtttctctc 39161503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 753 - 892
Target Start/End: Complemental strand, 55173608 - 55173469
Alignment:
Q  753 aaaaagtaggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgtttt 852  Q
    ||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||  || ||||||||||||||||||||||||||||||||||| |||    
T  55173608 aaaaattaggcttattcaatcacccggtcccttaacttaattgattgtctcaatttgatctcctaactataatttgtaccaatttggtcccctatgcttt 55173509  T
Q  853 gcttcgttactagttttagttctttctggtagtttctctc 892  Q
    |||| |||||| ||||||||  ||| || |||||||||||    
T  55173508 gctttgttacttgttttagtcttttttgctagtttctctc 55173469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 760 - 872
Target Start/End: Complemental strand, 50509476 - 50509364
Alignment:
Q  760 aggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgt 859  Q
    ||||||||||||||||| | ||||||||||||||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  50509476 aggcttattcaatcatctgatcccttaacttaattgattgtcttaatttggtcccctaactataatttgtaccaatttggtcccctatgttttgctttgt 50509377  T
Q  860 tactagttttagt 872  Q
    ||||| |||||||    
T  50509376 tactaattttagt 50509364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 759 - 892
Target Start/End: Complemental strand, 47097146 - 47097016
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 858  Q
    |||||||||||||||||||| || |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |   |||||||||||  ||    
T  47097146 taggcttattcaatcatccgatctcttaacttaattgattgtctcaatttagtcctctaactataatttgtaccaatttgat---ctatgttttgccccg 47097050  T
Q  859 ttactagttttagttctttctggtagtttctctc 892  Q
    ||||||||||||||  ||| || |||||||||||    
T  47097049 ttactagttttagtcatttttgttagtttctctc 47097016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 761 - 880
Target Start/End: Original strand, 55173334 - 55173454
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggt-cccctatgttttgcttcgt 859  Q
    ||||||||| |||||||||| ||||||||||||| ||||||| ||||| |||||||||||||||||||||  |||||||| ||||||| ||||||| |||    
T  55173334 ggcttattcgatcatccggttccttaacttaattgattgtcttaatttggtcccctaactataatttgtattaatttggtccccctatattttgctccgt 55173433  T
Q  860 tactagttttagttctttctg 880  Q
    ||||||||||||| |||||||    
T  55173434 tactagttttagtcctttctg 55173454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 759 - 891
Target Start/End: Original strand, 47096798 - 47096928
Alignment:
Q  759 taggcttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcg 858  Q
    |||||||||||||||| | | ||||||||||||||| ||| ||||||||| |||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  47096798 taggcttattcaatcacctgatcccttaacttaattgattatctcaatttggtcccctaac-ataatttgtaccaattt-gccccctatgttttgcttcg 47096895  T
Q  859 ttactagttttagttctttctggtagtttctct 891  Q
    ||||| |||||||| |||| || | ||||||||    
T  47096896 ttacttgttttagtcctttatgtttgtttctct 47096928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 764 - 872
Target Start/End: Original strand, 37996068 - 37996176
Alignment:
Q  764 ttattcaatcatccggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttact 863  Q
    ||||||||||| | | |||||||| | || | ||||| ||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| |||| |    
T  37996068 ttattcaatcacctgatcccttaattaaaatgattgtttcaatttggtcccttaactataatttgtatcaatttggtcccctatgttttgctttgttatt 37996167  T
Q  864 agttttagt 872  Q
    |||||||||    
T  37996168 agttttagt 37996176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 761 - 808
Target Start/End: Complemental strand, 2623498 - 2623451
Alignment:
Q  761 ggcttattcaatcatccggtcccttaacttaattaattgtctcaattt 808  Q
    ||||||||||||||  |||||||||||||||||| |||||||||||||    
T  2623498 ggcttattcaatcactcggtcccttaacttaattgattgtctcaattt 2623451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 779 - 862
Target Start/End: Original strand, 9738136 - 9738219
Alignment:
Q  779 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttac 862  Q
    ||||||||||||||||  ||||  ||| || ||||||||| ||||||||||||||| || |||| ||| |||||||| ||||||    
T  9738136 gtcccttaacttaattgtttgtaccaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttgctccgttac 9738219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 827 - 880
Target Start/End: Original strand, 47096947 - 47097001
Alignment:
Q  827 tgtaccaatttggtcccc-tatgttttgcttcgttactagttttagttctttctg 880  Q
    |||||||||||||||||| ||||||||||| | |||||||||||||| |||||||    
T  47096947 tgtaccaatttggtccccctatgttttgctccattactagttttagtcctttctg 47097001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 827 - 879
Target Start/End: Original strand, 39161436 - 39161488
Alignment:
Q  827 tgtaccaatttggtcccctatgttttgcttcgttactagttttagttctttct 879  Q
    ||||||||||||||||| ||||||||| | |||| ||||||||||| ||||||    
T  39161436 tgtaccaatttggtcccatatgttttgatccgttcctagttttagtcctttct 39161488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 779 - 853
Target Start/End: Complemental strand, 9739011 - 9738937
Alignment:
Q  779 gtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttg 853  Q
    |||||||||||| |||  |||| |||| || ||||||||| ||||||||||||||| || |||| ||| ||||||    
T  9739011 gtcccttaacttgattgtttgtatcaaattggtcccctaaatataatttgtaccaaattcgtcctctaagttttg 9738937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 813 - 877
Target Start/End: Original strand, 108047 - 108111
Alignment:
Q  813 ccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 877  Q
    ||||||| |||||||||| ||||||||||| || ||||||||| | |||||||||||||| ||||    
T  108047 ccctaaccataatttgtatcaatttggtcctctgtgttttgctccattactagttttagtccttt 108111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 778 - 887
Target Start/End: Complemental strand, 61151 - 61042
Alignment:
Q  778 ggtcccttaacttaattaattgtctcaatttagtcccctaactataatttgtaccaatttggtcccctatgttttgcttcgttactagttttagttcttt 877  Q
    |||||||||||||||||  ||||  ||| || ||||| ||| | ||||||||||||| || |||| ||| |||||||| |||||  |||||  || ||||    
T  61151 ggtcccttaacttaattgtttgtaccaaattggtcccttaaatttaatttgtaccaaattcgtcctctaagttttgctccgttatcagtttaggtccttt 61052  T
Q  878 ctggtagttt 887  Q
    ||| ||||||    
T  61051 ctgttagttt 61042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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