View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15276_low_10 (Length: 394)
Name: NF15276_low_10
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15276_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 39298466 - 39298838
Alignment:
| Q |
1 |
agttggcatcattttttgagaatagttgctcacattttcgccgatacctccggatgatggcatgatctcttcaccttcctaaaatcaaaccaaaattttc |
100 |
Q |
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| T |
39298466 |
agttggcatcattttttgagaatagttgctcacattttcgccgatacctcctgatgatggcatgatctcttcaccttcctaaaatca------------- |
39298552 |
T |
|
| Q |
101 |
agtgtattcagtcattatcaagtatcatgtcatttataccagttgaatcaaacttaactaaacatttgattatgaaaagtaaacatgatgataaaaaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
39298553 |
-gtgtattcagtcattatcaagtatcatgtcatttataccagttgaatcaaacttaattaaacatttgattatgaaaagtaaacatgatgataaaaaaga |
39298651 |
T |
|
| Q |
201 |
aatagtctaataaaagtgatgaatgtatagaacagaacctgaagttgaccagaagcccttttagtctcatagtcacgccatgattcatctttcttcttag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
39298652 |
aatagtctaataaaagtgatgaatgtatagaacagaacctgaagttgaccagaagcccttttagtctcatattcacgccatgattcatctttcttcttag |
39298751 |
T |
|
| Q |
301 |
cagtaaactccttagcagtctcgccagcagaagcagccaaacctttcacaacatccaccgatttcgacgcaagctcggccgcctttg |
387 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
39298752 |
cagtaaactccttagcagtctcaccagcagaagcagccaaacctttcacaacatccaccgatttcaacgcaagcccggccgcctttg |
39298838 |
T |
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