View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15276_low_11 (Length: 392)
Name: NF15276_low_11
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15276_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 377
Target Start/End: Original strand, 36057159 - 36057518
Alignment:
| Q |
18 |
atttttagatgcatgattttggacttgttagttatcaattgtcaccaagggcagaatgccttgccggcaatgctgagaatccatatgtgcctcgtaatta |
117 |
Q |
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| T |
36057159 |
atttttagatgcatgattttggacttgttagttatcaattgtcaccaagggcagaatgccttgccggcaatgctgagaatccatacgtgcctcgtaatta |
36057258 |
T |
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| Q |
118 |
tcaagagatccatacctgaagtgattaggggctcgattcctgagagcgaaagtttcaaaaagttcttttaaaccacatagcaattctttttcaagaatga |
217 |
Q |
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| T |
36057259 |
tcaagagatccatacctgaagtgattaggggttcgattcctgagagcgaaagtttcaaaaagttcttttaaaccacatagcaattctttttcaagaatga |
36057358 |
T |
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| Q |
218 |
taaggttgagataagtagtgttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataagggagtacttatagaaatgtctaatctcgca |
317 |
Q |
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| T |
36057359 |
taaggttgagataagtagtgttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataagggagtacttatagaaatgtctaatctcgca |
36057458 |
T |
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| Q |
318 |
tcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgcacttgcctttg |
377 |
Q |
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| T |
36057459 |
tcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgcacttggctttg |
36057518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 268 - 367
Target Start/End: Original strand, 28723708 - 28723808
Alignment:
| Q |
268 |
aaaggtaaatgaaacataagggagtacttatag-aaatgtctaatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgc |
366 |
Q |
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| T |
28723708 |
aaaggtaaagggaacataagggagtacatattggaaatgtctaatctcgcatcaaaactcaaggcactgaagttagaacttcctgaagatttaattgtgc |
28723807 |
T |
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| Q |
367 |
a |
367 |
Q |
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| T |
28723808 |
a |
28723808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 210 - 371
Target Start/End: Complemental strand, 23070502 - 23070341
Alignment:
| Q |
210 |
aagaatgataaggttgagataagtagtgttttatttaagctcatttcaatgaatttataaaggtaaatgaaacataagggagtacttat-agaaatgtct |
308 |
Q |
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| T |
23070502 |
aagaatgataaggttgaaactagtattgttttatccaaacttatttcaatgagct-acaaaggtaaagggaacataagggaatacatcttagaaatgtct |
23070404 |
T |
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| Q |
309 |
aatctcgcatcaaaactcaagacattgaagttagagtttcatgaagaattgattgtgcacttg |
371 |
Q |
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| T |
23070403 |
aatcttgccttcaaactcaaggcacggaatttagaacttcttgaagatttaattgtgcacttg |
23070341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 25461738 - 25461788
Alignment:
| Q |
101 |
tatgtgcctcgtaattatcaagagatccatacctgaagtgattaggggctc |
151 |
Q |
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| T |
25461738 |
tatgtgcctcatgattatcaaaatatccatacctgaaatgattaggggctc |
25461788 |
T |
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