View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15276_low_13 (Length: 333)
Name: NF15276_low_13
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15276_low_13 |
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| [»] scaffold0653 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 23 - 303
Target Start/End: Complemental strand, 9244371 - 9244098
Alignment:
| Q |
23 |
cacgaaagttagagaaattacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtgttttatccaaacttgatattgaatt |
122 |
Q |
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| T |
9244371 |
cacgaaagttagagaaattacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtgttttatccaaacttgatattgaatt |
9244272 |
T |
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| Q |
123 |
aatatgttttcttgtttggattgtaggagttgaggcatgaggttattactagttttgtatactctttgttgaaggtatnnnnnnnnttgcagagaattga |
222 |
Q |
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| T |
9244271 |
aatatgttttcttgtttggattctaggagttgaggcatgaggttatta------ttgtatattctttgttgaaggtat-aaaaaaattgcagagaattga |
9244179 |
T |
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| Q |
223 |
gatatagggcatctagaacggtctgaaaaattgataatggataagatgaagagggatgtatattgcacaaagaaaattgtg |
303 |
Q |
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| T |
9244178 |
gatatggggcatctagaacggtctgaaaaattgataatggataagatgaagagggatgtatattgcacaaagaaaattgtg |
9244098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 23 - 297
Target Start/End: Complemental strand, 9248490 - 9248218
Alignment:
| Q |
23 |
cacgaaagttagagaaattacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtgttttatccaaacttgatattgaatt |
122 |
Q |
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| T |
9248490 |
cacgaaagttggagaaattgcatcttcttatttatgttttcataaattctacatgtgagtattgaattgtttgttttttatccaaacttcatattgaatt |
9248391 |
T |
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| Q |
123 |
aatatgttttcttgtttggattgtaggagttgaggcatgaggttattactagttttgtatactctttgttgaaggtatnnnnnnnnttgcagagaattga |
222 |
Q |
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| T |
9248390 |
aatatgttttcttgtttggattctaggagttgaggcctgaggttattgcttgctttgtatgttcttcgataaaggtat--aataaattgcagagaattga |
9248293 |
T |
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| Q |
223 |
gatatagggcatctagaacggtctgaaaaattgataatggataagatgaagagggatgtatattgcacaaagaaa |
297 |
Q |
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| T |
9248292 |
gatatggtgcatctcgaacggtttgaaaaattgataatggataagatgaagaggaatgtatattgcacaaagaaa |
9248218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 303
Target Start/End: Original strand, 5393 - 5667
Alignment:
| Q |
23 |
cacgaaagttagagaaattacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtg-ttttatccaaacttgatattgaat |
121 |
Q |
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| T |
5393 |
cacgaaagttagagaaattacatgttcttatttatgttttaataaattctacatttgagtattgaattgtttgtgtttttatccaaacttgatattgaat |
5492 |
T |
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| Q |
122 |
taatatgttttcttgtttggattgtaggagttgaggcatgaggttattactagttttgtatactctttgttgaaggtatnnnnnnnnttgcagagaattg |
221 |
Q |
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| T |
5493 |
taatatgttttcttgtttggattctaggagttgaggcatgaggttatta------ttgtatattctttgttgaaggtat-aaaaaaattgcagagaattg |
5585 |
T |
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| Q |
222 |
agatatagggcatctagaacggtctgaaaaattgataatggataagatgaagagggatgtatattgcacaaagaaaattgtg |
303 |
Q |
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| T |
5586 |
agatatggggcatctagaacggtctgaaaaattgataatggataagatgaagagggatgtatattgcacaaagaaaattgtg |
5667 |
T |
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