View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15276_low_19 (Length: 295)
Name: NF15276_low_19
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15276_low_19 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 22659582 - 22659806
Alignment:
| Q |
18 |
agtgtaagattcttactttctttagagtgaaaatttattagtgaatctatctatctttgtgtttagtcatatcaagattttccttttgtacttaacttgg |
117 |
Q |
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| T |
22659582 |
agtgtaagattcttactttctttagagtgaaaatttattagtgaatctatctatctttgtgtttagtcatatcaagattttccttttgtacttaacttgg |
22659681 |
T |
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| Q |
118 |
aattgttggctgaagaaatttctcatttccatcactagtcactaccaaaattttctcattcaaccaactatatatgttgactcattttagaaacattcta |
217 |
Q |
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| T |
22659682 |
aattgttggctgaagaaatttctcatttctatcactagtcactaccaaaattttctcattcaaccaactatatatgttgactcattttagaaacattcta |
22659781 |
T |
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| Q |
218 |
annnnnnngatctactaaacctgca |
242 |
Q |
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| T |
22659782 |
atttttttgatctactaaacctgca |
22659806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 264 - 295
Target Start/End: Complemental strand, 9945252 - 9945221
Alignment:
| Q |
264 |
ggattaacaattatcaaatcctccactttcat |
295 |
Q |
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| T |
9945252 |
ggattaacaattatcaaatcctccactttcat |
9945221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 293
Target Start/End: Complemental strand, 15158451 - 15158422
Alignment:
| Q |
264 |
ggattaacaattatcaaatcctccactttc |
293 |
Q |
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| T |
15158451 |
ggattaacaattatcaaatcctccactttc |
15158422 |
T |
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