View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15276_low_2 (Length: 575)

Name: NF15276_low_2
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15276_low_2
NF15276_low_2
[»] chr8 (15 HSPs)
chr8 (15-555)||(12646249-12646789)
chr8 (15-559)||(12651377-12651921)
chr8 (172-255)||(12724335-12724418)
chr8 (472-543)||(18140242-18140313)
chr8 (480-531)||(27183144-27183195)
chr8 (480-531)||(27231090-27231141)
chr8 (490-559)||(18081373-18081442)
chr8 (472-545)||(18095592-18095665)
chr8 (452-559)||(12724010-12724120)
chr8 (118-157)||(4027483-4027522)
chr8 (452-555)||(12704885-12704988)
chr8 (124-158)||(6117394-6117428)
chr8 (125-158)||(12712299-12712332)
chr8 (124-157)||(14682403-14682436)
chr8 (467-531)||(26531544-26531608)
[»] chr4 (1 HSPs)
chr4 (467-531)||(4876025-4876089)
[»] chr3 (1 HSPs)
chr3 (468-531)||(5387617-5387680)
[»] chr7 (1 HSPs)
chr7 (467-535)||(25627367-25627435)
[»] chr5 (2 HSPs)
chr5 (118-157)||(30651138-30651177)
chr5 (118-157)||(31777484-31777523)
[»] chr2 (2 HSPs)
chr2 (118-157)||(29352912-29352951)
chr2 (118-157)||(34324907-34324946)
[»] chr6 (1 HSPs)
chr6 (467-531)||(34259099-34259163)
[»] chr1 (1 HSPs)
chr1 (467-527)||(51869186-51869246)


Alignment Details
Target: chr8 (Bit Score: 457; Significance: 0; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 15 - 555
Target Start/End: Complemental strand, 12646789 - 12646249
Alignment:
Q  15 catcatcatcgtcaaaatccaagtccatctcccagaaagggctattcttctctggcaaaattacccaagcaccttcaaaaaatatgtgaaaactaataat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| |||  ||    
T  12646789 catcatcatcgtcaaaatccaagtccatctcccagaaagggctattcttctctggcaaaaaaacccaagcaccttcaaaaaatatgtgaaaattaaccat 12646690  T
Q  115 tcgaataatcttatagtcatctctaacacgatcataaccaaatgaataaggttgagtattaaactcaatgtacttatatggtcgatggctacaaggaaca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12646689 tcgaataatcttatagtcatctctaacacgatcataaccaaatgaataaggttgagtattaaactcaatgttcttatatggtcgatggctacaaggaaca 12646590  T
Q  215 atcttaaattccccagtggctggattccacaatacaatggtcatggggtcaagaaaaccttgagagagacaaagaatgccattaacactagctgaacacc 314  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12646589 atcttaaattccccgttggctggattccacaatacaatggtcatggggtcaataaaaccttgagagagacaaagaatgccattaacactagctgaacacc 12646490  T
Q  315 aacaacgaacaaatggacaaccctctcgttgaaaatgaagaggaggtagcaactctaatctgactctattctcaaaattctcaccgtaaaatgtgcacag 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  12646489 aacaacgaacaaatggacaaccctctcgttgaaaatgaagaggaggtggcaactctaatctgactctattctcaaaactctcaccggaaaatgtgcacag 12646390  T
Q  415 agtgttgtaatttaggataagattcgtgctgtcttcttcctcattatgtttggatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaat 514  Q
    ||||| ||||| ||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  12646389 agtgtcgtaatctaggagaagattcttgttgtcttcttcctcattatgtttggatatgaaattagtgcggaacaagttcatgaaatgagggttttgaaat 12646290  T
Q  515 aaaagagaccatgatttcttagcacaggtgagtcgtgtgag 555  Q
    ||||||||||||| ||||||||||||||||| || ||||||    
T  12646289 aaaagagaccatggtttcttagcacaggtgaatcttgtgag 12646249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 15 - 559
Target Start/End: Complemental strand, 12651921 - 12651377
Alignment:
Q  15 catcatcatcgtcaaaatccaagtccatctcccagaaagggctattcttctctggcaaaattacccaagcaccttcaaaaaatatgtgaaaactaataat 114  Q
    |||||| ||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||| |||||||||||||||  |||||||||||||||    
T  12651921 catcattatcatcaaattccaagtccatctcccagaaagggctattcatctctggcaaaattatccatgcaccttcaaaaaat--gtgaaaactaataat 12651824  T
Q  115 tcgaataatcttatagtcatctctaacacgatcataaccaaatgaataaggttgagtattaaactcaatgtacttatatggtcgat--ggctacaaggaa 212  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  ||||||||||||    
T  12651823 tcgaataatcttatggtcatccttaacacgatcataaccaaatgaataaggttgagtattaaactcaatgtatttatatggtcgatatggctacaaggaa 12651724  T
Q  213 caatcttaaattccccagtggctggattccacaatacaatggtcatggggtcaagaaaaccttgagagagacaaagaatgccattaacactagctgaaca 312  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12651723 caatcttaaattccccggtggctggattccacaatacaatggtcatggggtcaagaaaaccttgagagagacaaagaatgccattaacactagctgaaca 12651624  T
Q  313 ccaacaacgaacaaatggacaaccctctcgttgaaaatgaagaggaggtagcaactctaatctgactctattctcaaaattctcaccgtaaaatgtgcac 412  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||| || ||||||||||     
T  12651623 ccaacaacgaacaaatggacaaccctctcgttgaaaatgaagaggatgtggcaactctaatctgactctattctcaaaactctcatcggaaaatgtgcaa 12651524  T
Q  413 agagtgttgtaatttaggataagattcgtgctgtcttcttcctcattatgtttggatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaa 512  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  12651523 agagtgtcgtaatttaggataagattcgtgttgtcttcttcctcattatgtttggatatgaaattagtgcggaacaagttcatgaaatgagggttttgaa 12651424  T
Q  513 ataaaagagaccatgatttcttagcacaggtgagtcgtgtgagagat 559  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  12651423 ataaaagagaccattatttcttagcacaggtgagtcgtgtgagagat 12651377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 172 - 255
Target Start/End: Complemental strand, 12724418 - 12724335
Alignment:
Q  172 attaaactcaatgtacttatatggtcgatggctacaaggaacaatcttaaattccccagtggctggattccacaatacaatggt 255  Q
    |||||||||||||| || ||| ||  ||||||||  |||||||| |||||||||| | ||||||||||||||||||||||||||    
T  12724418 attaaactcaatgttctcatacggctgatggctatgaggaacaaccttaaattcctcggtggctggattccacaatacaatggt 12724335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 472 - 543
Target Start/End: Original strand, 18140242 - 18140313
Alignment:
Q  472 gaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatgatttcttagcacaggt 543  Q
    |||||| |||||||||| |||||||||||  |||||||| |||||||| ||||||||||| |||||||||||    
T  18140242 gaaattggtgcggaacatgttcatgaaattagggttttggaataaaagtgaccatgattttttagcacaggt 18140313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 480 - 531
Target Start/End: Complemental strand, 27183195 - 27183144
Alignment:
Q  480 tgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatgattt 531  Q
    ||||||||||||| |||||||  |||||||||||||||||||||||||||||    
T  27183195 tgcggaacaagttgatgaaattagggttttgaaataaaagagaccatgattt 27183144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 480 - 531
Target Start/End: Original strand, 27231090 - 27231141
Alignment:
Q  480 tgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatgattt 531  Q
    ||||||||||||| |||||||  |||||||||||||||||||||||||||||    
T  27231090 tgcggaacaagttgatgaaattagggttttgaaataaaagagaccatgattt 27231141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 490 - 559
Target Start/End: Complemental strand, 18081442 - 18081373
Alignment:
Q  490 gttcatgaaatgtgggttttgaaataaaagagaccatgatttcttagcacaggtgagtcgtgtgagagat 559  Q
    |||||||||||  ||||||||||| | ||||||||||||||| |||||||| ||||  ||||||||||||    
T  18081442 gttcatgaaattagggttttgaaaaagaagagaccatgattttttagcacaagtgaaacgtgtgagagat 18081373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 472 - 545
Target Start/End: Complemental strand, 18095665 - 18095592
Alignment:
Q  472 gaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatgatttcttagcacaggtga 545  Q
    |||||| |||||||||| |||||||||||  |||||||| || | ||| ||||||||||| |||||||||||||    
T  18095665 gaaattggtgcggaacatgttcatgaaattagggttttggaaaagaagtgaccatgatttgttagcacaggtga 18095592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 452 - 559
Target Start/End: Complemental strand, 12724120 - 12724010
Alignment:
Q  452 tcctcattatgtttggatat---gaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatgatttcttagcacaggtgagtc 548  Q
    ||||||| |||||||||||    |||||| |||||||||| ||||||||||   | |||||| || ||||||||||||||||| | |||||| ||||  |    
T  12724120 tcctcatcatgtttggatagtaagaaattggtgcggaacatgttcatgaaaatagagttttggaacaaaagagaccatgatttttgagcacaagtgaaac 12724021  T
Q  549 gtgtgagagat 559  Q
    |||||||||||    
T  12724020 gtgtgagagat 12724010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 4027522 - 4027483
Alignment:
Q  118 aataatcttatagtcatctctaacacgatcataaccaaat 157  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  4027522 aataatcttatagtcatctctaacacggtcataaccaaat 4027483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 555
Target Start/End: Complemental strand, 12704988 - 12704885
Alignment:
Q  452 tcctcattatgtttggatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatgatttcttagcacaggtgagtcgtg 551  Q
    ||||| || ||||||||||||||||| || ||||||| |||||| ||||  ||| ||||||||||||| ||  ||||||| ||| |||| |||| ||||     
T  12704988 tcctcgttgtgtttggatatgaaattggttcggaacatgttcataaaatcagggctttgaaataaaagggaaaatgattttttaacacatgtgaatcgtt 12704889  T
Q  552 tgag 555  Q
    ||||    
T  12704888 tgag 12704885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 6117428 - 6117394
Alignment:
Q  124 cttatagtcatctctaacacgatcataaccaaatg 158  Q
    ||||||||||| |||||||||||||||||||||||    
T  6117428 cttatagtcatatctaacacgatcataaccaaatg 6117394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 12712299 - 12712332
Alignment:
Q  125 ttatagtcatctctaacacgatcataaccaaatg 158  Q
    |||||||||| |||||||||||||||||||||||    
T  12712299 ttatagtcatgtctaacacgatcataaccaaatg 12712332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 124 - 157
Target Start/End: Original strand, 14682403 - 14682436
Alignment:
Q  124 cttatagtcatctctaacacgatcataaccaaat 157  Q
    |||||| |||||||||||||||||||||||||||    
T  14682403 cttataatcatctctaacacgatcataaccaaat 14682436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 531
Target Start/End: Complemental strand, 26531608 - 26531544
Alignment:
Q  467 gatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatgattt 531  Q
    |||||||||||  |||||||||  ||||| |||   ||||||| |||||||||||||||||||||    
T  26531608 gatatgaaatttttgcggaacatattcataaaactagggttttcaaataaaagagaccatgattt 26531544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 467 - 531
Target Start/End: Complemental strand, 4876089 - 4876025
Alignment:
Q  467 gatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatgattt 531  Q
    ||||||||||| |||||||||| |||||||||||  ||||||||||||||||||||| |||||||    
T  4876089 gatatgaaattggtgcggaacatgttcatgaaattagggttttgaaataaaagagacgatgattt 4876025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 468 - 531
Target Start/End: Complemental strand, 5387680 - 5387617
Alignment:
Q  468 atatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatgattt 531  Q
    |||||||||| ||||||||||| | ||||||||  ||||||||||||||||||||||| |||||    
T  5387680 atatgaaattggtgcggaacaattgcatgaaattagggttttgaaataaaagagaccaagattt 5387617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 535
Target Start/End: Complemental strand, 25627435 - 25627367
Alignment:
Q  467 gatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatgatttctta 535  Q
    |||||||||||| ||||||||| | ||||||||   ||||||| |||||| ||||||||||||||||||    
T  25627435 gatatgaaattattgcggaacatggtcatgaaagaagggttttcaaataagagagaccatgatttctta 25627367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 30651177 - 30651138
Alignment:
Q  118 aataatcttatagtcatctctaacacgatcataaccaaat 157  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  30651177 aataatcttatagtcatctctaacatggtcataaccaaat 30651138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 31777523 - 31777484
Alignment:
Q  118 aataatcttatagtcatctctaacacgatcataaccaaat 157  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  31777523 aataatcttatagtcatctctaacatggtcataaccaaat 31777484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 29352912 - 29352951
Alignment:
Q  118 aataatcttatagtcatctctaacacgatcataaccaaat 157  Q
    ||||||||||||||||||||||||||  ||||||||||||    
T  29352912 aataatcttatagtcatctctaacacagtcataaccaaat 29352951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 157
Target Start/End: Complemental strand, 34324946 - 34324907
Alignment:
Q  118 aataatcttatagtcatctctaacacgatcataaccaaat 157  Q
    ||||||||||||||||||||||||| | ||||||||||||    
T  34324946 aataatcttatagtcatctctaacatggtcataaccaaat 34324907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 531
Target Start/End: Original strand, 34259099 - 34259163
Alignment:
Q  467 gatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatgattt 531  Q
    |||||||||||  ||||||||| |||||||||| | | || ||| ||||| ||||||||||||||    
T  34259099 gatatgaaattgttgcggaacatgttcatgaaacgagtgtcttgtaataagagagaccatgattt 34259163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 527
Target Start/End: Complemental strand, 51869246 - 51869186
Alignment:
Q  467 gatatgaaattagtgcggaacaagttcatgaaatgtgggttttgaaataaaagagaccatg 527  Q
    |||||||||||||||| |||   |||||||||||| |||| || |||||| ||||||||||    
T  51869246 gatatgaaattagtgcagaagttgttcatgaaatgagggtcttcaaataagagagaccatg 51869186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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