View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15276_low_20 (Length: 286)

Name: NF15276_low_20

Description: NF15276

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15276_low_20

[»] chr2 (3 HSPs)

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 3)

Name: chr2

Description:

Target: chr2; HSP #1

Raw Score: 45; E-Value: 1e-16

Query Start/End: Original strand, 223 - 271

Target Start/End: Complemental strand, 12960822 - 12960774

Alignment:

Q	223	ggggttggaggtgtcggtggaaaaggtggaggatttggaggtggtattg	271	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12960822	ggggttggaggtggcggtggaaaaggtggaggatttggaggtggtattg	12960774	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2

Raw Score: 33; E-Value: 0.000000002

Query Start/End: Original strand, 227 - 267

Target Start/End: Complemental strand, 12960728 - 12960688

Alignment:

Q	227	ttggaggtgtcggtggaaaaggtggaggatttggaggtggt	267	Q
		\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12960728	ttggaggtggcggtggaaaaggcggaggatttggaggtggt	12960688	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3

Raw Score: 32; E-Value: 0.000000006

Query Start/End: Original strand, 229 - 268

Target Start/End: Complemental strand, 12960909 - 12960870

Alignment:

Q	229	ggaggtgtcggtggaaaaggtggaggatttggaggtggta	268	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	12960909	ggaggtggcggtggaaaaggcggaggatttggaggtggta	12960870	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]