View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15276_low_22 (Length: 273)

Name: NF15276_low_22
Description: NF15276
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15276_low_22
NF15276_low_22
[»] chr6 (21 HSPs)
chr6 (18-268)||(2954574-2954829)
chr6 (179-268)||(2996703-2996793)
chr6 (177-248)||(2938116-2938187)
chr6 (177-267)||(2935255-2935349)
chr6 (188-248)||(2974674-2974734)
chr6 (177-268)||(2929965-2930059)
chr6 (106-169)||(2996867-2996930)
chr6 (179-248)||(2983524-2983593)
chr6 (110-169)||(2935124-2935183)
chr6 (177-230)||(2927816-2927869)
chr6 (217-268)||(2965228-2965280)
chr6 (106-165)||(2937981-2938040)
chr6 (110-169)||(2929834-2929893)
chr6 (106-165)||(2974528-2974587)
chr6 (210-260)||(2986421-2986472)
chr6 (106-169)||(3003278-3003341)
chr6 (27-81)||(2978488-2978542)
chr6 (106-169)||(2927681-2927744)
chr6 (27-81)||(2937702-2937756)
chr6 (27-81)||(2974249-2974303)
chr6 (106-147)||(2965030-2965071)
[»] scaffold0024 (2 HSPs)
scaffold0024 (178-267)||(34573-34663)
scaffold0024 (18-81)||(44713-44776)
[»] chr7 (3 HSPs)
chr7 (177-267)||(3339681-3339775)
chr7 (106-169)||(3339546-3339609)
chr7 (27-81)||(3339267-3339321)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 2954574 - 2954829
Alignment:
Q  18 gttttcacaaggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgtttggagtagtgacattaccctaatggtctttgcaaaga 117  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  2954574 gttttcacaacgagttcttggaattcctcaattaagagttgatgatcagaccgatattttgtttggagtagtgtcattaccctaatggtctttgcaaaga 2954673  T
Q  118 attaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcaggtgttatc-----acttcaatcaatttgttctgtcttgcaagtagtaca 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||    
T  2954674 attaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcaggtgttatcactttacttcaatcaatttgttctgtcttgcaagtagtaca 2954773  T
Q  213 agcctcctagtgatttctttcattgttgagttcatattattgctattagtattatc 268  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  2954774 agcctcctagtgatttctttcaatgttgagttcatattattgctattagtattatc 2954829  T

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Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 179 - 268
Target Start/End: Complemental strand, 2996793 - 2996703
Alignment:
Q  179 ttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcat-attattgctattagtattatc 268  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2996793 ttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattatc 2996703  T

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Target: chr6; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 177 - 248
Target Start/End: Original strand, 2938116 - 2938187
Alignment:
Q  177 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcata 248  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  2938116 acttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttctttcattgttgagttcata 2938187  T

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Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 2935255 - 2935349
Alignment:
Q  177 acttcaatcaatttgttctgtcttgcaagtagtacaa---gcctcctagtgatttctttcattgttgagttcat-attattgctattagtattat 267  Q
    |||||||||| ||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||||| |||||| |||||||||||||    
T  2935255 acttcaatcagtttgttctgtcttgcaagttgtacaacaagcctcctagtgatttctttcattgttgagttcataattatttctattagtattat 2935349  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 2974674 - 2974734
Alignment:
Q  188 tttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcata 248  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2974674 tttgttctgtcttgcaagtagtacaagcatcctagtgatttctttcattgttgagttcata 2974734  T

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Target: chr6; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 2929965 - 2930059
Alignment:
Q  177 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctag--tgatttctttcattgttgagttcat-attattgctattagtattatc 268  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||  |||||||||| |||||||||||||| ||||||| ||||  |||||||    
T  2929965 acttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagcttgatttcttttattgttgagttcataattattgttattcttattatc 2930059  T

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Target: chr6; HSP #7
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 2996930 - 2996867
Alignment:
Q  106 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 169  Q
    ||||||||| || |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  2996930 tctttgcaaggacttaaatgctttttgtaggaatccttggcataagttgaaggctactctcagg 2996867  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 2983524 - 2983593
Alignment:
Q  179 ttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcata 248  Q
    ||||| || ||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||    
T  2983524 ttcaaacagtttgttctgtcttgcaaatagtacaagcatcctagtcatttctttcattgttgagttcata 2983593  T

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Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 2935124 - 2935183
Alignment:
Q  110 tgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 169  Q
    |||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  2935124 tgcaaagacttaaatgctttttgtaagaatccttggcataagttgaaggctactctcagg 2935183  T

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Target: chr6; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 2927816 - 2927869
Alignment:
Q  177 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttct 230  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2927816 acttcaatcagtttgttctgtcttgcaagttgtacaagcctcctagtgatttct 2927869  T

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Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 217 - 268
Target Start/End: Original strand, 2965228 - 2965280
Alignment:
Q  217 tcctagtgatttctttcattgttgagttcat-attattgctattagtattatc 268  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2965228 tcctagtgatttctttcattgttgagttcataattattgctattagtattatc 2965280  T

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Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 2937981 - 2938040
Alignment:
Q  106 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactct 165  Q
    |||||||||||||||||||||||| || || |||||||||| ||||||||||||||||||    
T  2937981 tctttgcaaagaattaaatgctttctgcagtaatccttggcataagttgaaggctactct 2938040  T

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Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 2929834 - 2929893
Alignment:
Q  110 tgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 169  Q
    |||||||| |||||||||||||||  ||||||||||| || |||||||||||||||||||    
T  2929834 tgcaaagacttaaatgctttttgttagaatccttggcataggttgaaggctactctcagg 2929893  T

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Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 2974528 - 2974587
Alignment:
Q  106 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactct 165  Q
    ||||||||||||||| ||||||| ||||||||||||||||| || |||||||||| ||||    
T  2974528 tctttgcaaagaattgaatgcttattgtaggaatccttggcataggttgaaggctgctct 2974587  T

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Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 2986421 - 2986472
Alignment:
Q  210 acaagcctcctagtgatttctttcattgttgagttcat-attattgctatta 260  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| |||||    
T  2986421 acaagcctcctagtgatttctttcattgttgagttcataattattgttatta 2986472  T

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Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 3003341 - 3003278
Alignment:
Q  106 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 169  Q
    |||| ||||||| |||||||||| ||||| |||||| |||| ||||||||||||||||||||||    
T  3003341 tcttggcaaagacttaaatgcttattgtaagaatccatggcataagttgaaggctactctcagg 3003278  T

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Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 2978488 - 2978542
Alignment:
Q  27 aggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 81  Q
    ||||||||||| ||||||||||||||||||||| |||  ||||||||||||||||    
T  2978488 aggagttcttgaaattcctcaattaagagttgaggatgggaccgaaattttgttt 2978542  T

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Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 2927681 - 2927744
Alignment:
Q  106 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 169  Q
    |||||||||||| |||||||||| ||||| ||||||  | | ||||||||||||||||||||||    
T  2927681 tctttgcaaagacttaaatgcttattgtaagaatccacgacataagttgaaggctactctcagg 2927744  T

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Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 2937702 - 2937756
Alignment:
Q  27 aggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 81  Q
    ||||||||||| |||||||||||||| |||||| |||  ||||||||||||||||    
T  2937702 aggagttcttgaaattcctcaattaacagttgaggattcgaccgaaattttgttt 2937756  T

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Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 2974249 - 2974303
Alignment:
Q  27 aggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 81  Q
    ||||||||||| |||||||||||||| |||| | |||  ||||||||||||||||    
T  2974249 aggagttcttgaaattcctcaattaacagttcaagatgggaccgaaattttgttt 2974303  T

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Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 2965030 - 2965071
Alignment:
Q  106 tctttgcaaagaattaaatgctttttgtaggaatccttggcg 147  Q
    |||||||||||| || |||||||||||| |||||||||||||    
T  2965030 tctttgcaaagatttgaatgctttttgtgggaatccttggcg 2965071  T

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Target: scaffold0024 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 34663 - 34573
Alignment:
Q  178 cttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcat-attattgctattagtattat 267  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  34663 cttcaatcagtttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcataattattgctattagtattat 34573  T

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Target: scaffold0024; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 44776 - 44713
Alignment:
Q  18 gttttcacaaggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 81  Q
    ||||||| || ||||||||| ||||||||||||||||| |||||||||  | ||||||||||||    
T  44776 gttttcagaaagagttcttgaaattcctcaattaagagctgatgatcaacctgaaattttgttt 44713  T

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Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 177 - 267
Target Start/End: Original strand, 3339681 - 3339775
Alignment:
Q  177 acttcaatcaatttgttctgtcttgcaagtagtacaagcctcctagtgatttctttcattgttgagttcat----attattgctattagtattat 267  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    ||||||||| ||||||||||    
T  3339681 acttcaatcagtttgttctgtcttgcaagtagtacaggcctcctagtgatttctttctttgttgagttcatcataattattgctcttagtattat 3339775  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 169
Target Start/End: Original strand, 3339546 - 3339609
Alignment:
Q  106 tctttgcaaagaattaaatgctttttgtaggaatccttggcgtaagttgaaggctactctcagg 169  Q
    |||| ||||||| ||||||| |||||||| ||||||||||| || ||||||||| |||||||||    
T  3339546 tcttggcaaagacttaaatgatttttgtaagaatccttggcataggttgaaggccactctcagg 3339609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 81
Target Start/End: Original strand, 3339267 - 3339321
Alignment:
Q  27 aggagttcttggaattcctcaattaagagttgatgatcagaccgaaattttgttt 81  Q
    ||||||||||| |||||||||||||| |||||| |||  ||||||||||||||||    
T  3339267 aggagttcttgaaattcctcaattaacagttgacgatgggaccgaaattttgttt 3339321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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